PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000127125
Common NameC3HL2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 436aa    MW: 48200.6 Da    PI: 7.1092
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000127125genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08137157526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C +++r G C++Gd+C F+Hg
  MDP0000127125 137 VCADYRR-GSCSRGDSCEFSHG 157
                    799****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.7E-5132158IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-5133159IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.338133159IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6137157IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287167191IPR000571Zinc finger, CCCH-type
SMARTSM003562.4167190IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MSSVCDEQHN FHPSHQLQSF KKTLLRDSNT DIPPRKLLTR RSPQEFPSSD MYAAADCGSP  60
RFSSADEALV RKFLPCNTGS DDDEVDPYSS DHFRMFEFKV RRCTRSRSHD WTDCPFAHPG  120
EKARRRDPRR HHYSGTVCAD YRRGSCSRGD SCEFSHGVFE CWLHPARYRT EACKDGKNCK  180
RKVCFFAHTP RQLRVLPADQ VLSPMAGSKK YHLNNSSVGS PRSCSNNNKQ YCCLFCHSAA  240
ATSSPTSTLL DGMSHHLSPP VSPAAKHCSS VDEFHNSPVM SPCGGLGLGC LDQVHASTGG  300
LMSYNEVVAE LMSSLEAMKF HEAAAAAAAS QKRWVDISFD VNMNYAAADD DLQQQQQQFI  360
LSPSTPSPSQ PFGGGKGRGI NFFDGDENWS SRNGSLLGFD RDTNMPIKNN EIINGGGFTS  420
AADSDPDLGW VNDLLM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001315919.10.0zinc finger CCCH domain-containing protein 2
TrEMBLD9ZIU90.0D9ZIU9_MALDO; C3HL domain class transcription factor
STRINGXP_008381588.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.19e-76C3H family protein