PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000126939

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

FAR1

Protein Properties

Length: 748aa MW: 87073.7 Da PI: 4.9518

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000126939	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	70	5.6e-22	138	221	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++++etrtgC a++++++ ++ +w+v++++leHnH + MDP0000126939 138 NYYNYYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRKKETRTGCLAMIRLRLVESTRWRVDEVKLEHNHLF 221 69**************************************99888.....88999****************************77 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-19	138	221	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-30	343	436	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.483	629	665	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.2E-5	640	667	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 748 aa Download sequence Send to blast
MNGDGTFSPI VQGLSADHDL HITVVGEIKE GSPNSEQLLE DENNDLENDC EQLFEIEGNE 60 AESERDDTSD QFFDIESNDH ENDQGDINEQ LFEIEGNNHE ISRDDRTLID DQNGGSQEKD 120 YPPPFVGLEF DSYDDAYNYY NYYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI 180 KEANSRKKET RTGCLAMIRL RLVESTRWRV DEVKLEHNHL FDPERAQNSK SHKRMDFGAK 240 RKMESTPDVE VRTIKLYRTP VVDAVGYGCP NSNEEEINNQ VDRFKRLKLK KGDARAMYNY 300 FCRAQLTDPN FFYVIDLNDE GHMRNVFWID SRSRAAYSYF SDVVSFDTTC LSNNYEIPLA 360 AFVGVNHHGQ TILLGCCLLA DETPETYIWL FRAWLTCMSG RPPQTIITSQ CKALQSAIAE 420 VFPRAHHRLC SSHVVQSILE NMGAIQEYEA FQLILSTTVY DSVKVDEFEL AWEDMVKRFR 480 IKDREFIRSL FEDRERWVPA YSKDTFFAVM PNIQNGESTN PFFHSYIHPQ TSLEEFLSVY 540 DVILEKKRQE ETHNDNESGE LSSMLRTGCY YESQLSKFYT KDVFRKFQDE VLMMSSCFSI 600 TQVHTNGPIV TYMIKEREGE EILRGVRNFE VMYDKAGAEI RCMCSCFNLN GYLCRHALCI 660 LNYNGVEEIP FQYILTRWRK DFKRLYVPNL GSNNVDITNP VQWFDHLYRR AMQVVQEGMI 720 SQDHYMVSWQ AFKETLNKVR LVADKHVQ

Sequence ? help Back to Top

Protein Sequence Length: 748 aa Download sequence Send to blast

MNGDGTFSPI VQGLSADHDL HITVVGEIKE GSPNSEQLLE DENNDLENDC EQLFEIEGNE  60
AESERDDTSD QFFDIESNDH ENDQGDINEQ LFEIEGNNHE ISRDDRTLID DQNGGSQEKD  120
YPPPFVGLEF DSYDDAYNYY NYYAKELGFA IRVKSSWTKR NSKEKRGAVL CCNCEGFKTI  180
KEANSRKKET RTGCLAMIRL RLVESTRWRV DEVKLEHNHL FDPERAQNSK SHKRMDFGAK  240
RKMESTPDVE VRTIKLYRTP VVDAVGYGCP NSNEEEINNQ VDRFKRLKLK KGDARAMYNY  300
FCRAQLTDPN FFYVIDLNDE GHMRNVFWID SRSRAAYSYF SDVVSFDTTC LSNNYEIPLA  360
AFVGVNHHGQ TILLGCCLLA DETPETYIWL FRAWLTCMSG RPPQTIITSQ CKALQSAIAE  420
VFPRAHHRLC SSHVVQSILE NMGAIQEYEA FQLILSTTVY DSVKVDEFEL AWEDMVKRFR  480
IKDREFIRSL FEDRERWVPA YSKDTFFAVM PNIQNGESTN PFFHSYIHPQ TSLEEFLSVY  540
DVILEKKRQE ETHNDNESGE LSSMLRTGCY YESQLSKFYT KDVFRKFQDE VLMMSSCFSI  600
TQVHTNGPIV TYMIKEREGE EILRGVRNFE VMYDKAGAEI RCMCSCFNLN GYLCRHALCI  660
LNYNGVEEIP FQYILTRWRK DFKRLYVPNL GSNNVDITNP VQWFDHLYRR AMQVVQEGMI  720
SQDHYMVSWQ AFKETLNKVR LVADKHVQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.23571	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008373992.1	0.0	protein FAR1-RELATED SEQUENCE 8
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	M5XGN7	0.0	M5XGN7_PRUPE; Uncharacterized protein
STRING	XP_008373992.1	0.0	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Link Out ? help Back to Top
Phytozome	MDP0000126939

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]