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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | MDP0000126553 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 960aa MW: 106215 Da PI: 6.6653 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.5 | 5.5e-19 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
k ++t+eq+e+Le+l++++++ps +r++L +++ +++ +q+kvWFqNrR +ek+
MDP0000126553 20 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
5679*****************************************************97 PP
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| 2 | START | 179.9 | 1.5e-56 | 166 | 374 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95
+a e+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++++ +v s+g g+++l +
MDP0000126553 166 IAXETLAEFLSKATGTAVEWVQLPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWFRNCRSVDVXNVMSTGngGTIELLY 260
678999****************************************************.8888888888*************************** PP
EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
++l+a+++l+p Rdf+ +Ry+ l++g++v++++S++++q+ p+ +++vRae+lpSg+li+p+++g+s +++v+h+dl+ ++++++lr+l++s
MDP0000126553 261 MQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSILHIVDHMDLEPWSVPEVLRPLYES 356
******************************************9988899*********************************************** PP
HHHHHHHHHHHHTXXXXX CS
START 188 glaegaktwvatlqrqce 205
+++ ++kt++a+l+++++
MDP0000126553 357 STILAQKTTMAALRNLRQ 374
**************9876 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50071 | 15.92 | 15 | 79 | IPR001356 | Homeobox domain |
| SMART | SM00389 | 5.3E-16 | 17 | 83 | IPR001356 | Homeobox domain |
| SuperFamily | SSF46689 | 4.28E-17 | 19 | 82 | IPR009057 | Homeodomain-like |
| CDD | cd00086 | 8.89E-17 | 20 | 80 | No hit | No description |
| Pfam | PF00046 | 1.3E-16 | 21 | 78 | IPR001356 | Homeobox domain |
| Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
| CDD | cd14686 | 2.26E-6 | 72 | 111 | No hit | No description |
| PROSITE profile | PS50848 | 25.706 | 156 | 384 | IPR002913 | START domain |
| CDD | cd08875 | 4.61E-78 | 160 | 375 | No hit | No description |
| SMART | SM00234 | 2.0E-42 | 165 | 375 | IPR002913 | START domain |
| SuperFamily | SSF55961 | 1.79E-37 | 166 | 377 | No hit | No description |
| Pfam | PF01852 | 4.7E-54 | 166 | 374 | IPR002913 | START domain |
| Gene3D | G3DSA:3.30.530.20 | 2.8E-23 | 166 | 372 | IPR023393 | START-like domain |
| Pfam | PF08670 | 1.3E-50 | 713 | 851 | IPR013978 | MEKHLA |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0008289 | Molecular Function | lipid binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 960 aa Download sequence Send to blast |
MAVTSSCKDG GMKMQMDNGK YVRYTPEQVE ALERLYHECP KPSSMRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLTAMNKLLM EENDRLQKQV SQLVYENTYF 120 RQHTQNATLA TTDTSCESVV TSGQHHLTAQ QHPPPRDASP AGLLSIAXET LAEFLSKATG 180 TAVEWVQLPG MKPGPDSIGI VAISHGCTGV AARACGLVGL DPTRVAEILK DRPSWFRNCR 240 SVDVXNVMST GNGGTIELLY MQLYAPTTLA PARDFWLLRY TSVLEDGSLV VCERSLNNTQ 300 NGPSMPPVQN FVRAEMLPSG YLIRPCEGGG SILHIVDHMD LEPWSVPEVL RPLYESSTIL 360 AQKTTMAALR NLRQISQEVS QPNSAGWGRR PAALRALSQR LSKCVTISPP YDLLEWGFNE 420 AVNGFTDEGW SVLESDGVDD VTLLVNSSPS KMMSANLYTD GVPSMSTAXL CAKASMLLQN 480 VPPAILLRFL REHRSEWADR SIDAYSAAAV KAGPCNMLGP RVGSFGDQVI LPLAHTIEHE 540 EFMEVIKIEN MGHYREDMIM PAADIFLLQL CSGVDENAVG TCSELVFAPI DASFSDDAPI 600 LPSGFRIIPL DSRMDTPSPN RTLDLASALE VGPAGSRASG DNAGHSGNTK SVMTIAFQFA 660 FEIHLQENVA SMARQYVRSI IASVQRVALA LSPSRFGSHA GFRPPPGTPQ AQTLAGWICQ 720 SYRCYLGGEL LKTEGSESIL KSLWHHPDAI LCXSLKAMPI FTFGNQAGLD MLETTLVALQ 780 DITLEKIFDD NGRKTLCSEF PQIMQQGFMC HQGGICMSSM GRPISYERAV AWKVLNEEET 840 AHCICFMFIN WVRKWALASQ SPSYKIWFKF ALVSKPYWRQ LQGDNLLSIL RTAGALFLFV 900 VGTVRVFLKS TSLRSEMHLR KQSMEAMMME TLQGETAAIE REXAALKEEK SALGVGEEGP |
| Expression -- UniGene ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| UniGene ID | E-value | Expressed in | ||||
| Mdo.944 | 0.0 | bud| fruit| stem | ||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Probable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}. | |||||
| Regulation -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | INDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | FJ177427 | 0.0 | FJ177427.1 Malus x domestica putative HB8 HD-ZipIII mRNA, complete cds. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | NP_001280796.1 | 0.0 | homeobox-leucine zipper protein ATHB-8-like | ||||
| Swissprot | Q39123 | 0.0 | ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8 | ||||
| TrEMBL | A0A498HMJ0 | 0.0 | A0A498HMJ0_MALDO; Uncharacterized protein | ||||
| STRING | XP_008367844.1 | 0.0 | (Malus domestica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF1946 | 33 | 87 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G32880.1 | 0.0 | homeobox gene 8 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | MDP0000126553 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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