PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000126221
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family YABBY
Protein Properties Length: 220aa    MW: 24892.3 Da    PI: 4.5563
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000126221genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY200.95e-6261702169
          YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 
                    ++f+ ++q+CyvqC+fC+t+l+vs+P +sl+++ vtvrCGhC+ llsvn++kas    +lla+  +      +e++eel  ee+  k+n    +s+
  MDP0000126221   6 QLFDLPDQICYVQCGFCTTLLLVSIPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLAQ------DEQKEELCLEEMVEKQNPLDMRSP 95 
                    7899**************************98659***************9988333333333332......333344444443333333333444 PP

          YABBY  93 stsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                       vs+   s+ne+e++  + p v++PPekrqr+Psaynrfikeei+r+k +nP+++h+eafs+aaknWa fP+i ++
  MDP0000126221  96 PMVVSN---SDNEEEDTIFMNPiVNKPPEKRQRAPSAYNRFIKEEIKRLKDENPSMTHKEAFSTAAKNWAQFPPIQYK 170
                    444443...556666655555559***************************************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.6E-6011169IPR006780YABBY protein
SuperFamilySSF470955.24E-9116166IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.0E-6118166IPR009071High mobility group box domain
CDDcd000841.14E-4125166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MSTLNQLFDL PDQICYVQCG FCTTLLLVSI PCSSLSMLAV TVRCGHCSCL LSVNMMKASF  60
VPLHLLASLA QDEQKEELCL EEMVEKQNPL DMRSPPMVVS NSDNEEEDTI FMNPIVNKPP  120
EKRQRAPSAY NRFIKEEIKR LKDENPSMTH KEAFSTAAKN WAQFPPIQYK EDGPDGESCT  180
SQREENVAWE SDVPEAVEDG KVFGETKALR HSIWARTPFE
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in a group of around 15 epidermal cells on the abaxial half of each ovule primordium (chalaza, outer integument initiation sites). Later present in the outer cell layer of the outer integument on the abaxial side of the ovule primordium. Confined to the chalazal end of the integument and disappears after anthesis. Also present in embryos at the globular stage. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Functional Description ? help Back to Top
Source Description
UniProtEssential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2834683e-42KP283468.1 Prunus armeniaca INNER NO OUTER (INO) gene, complete cds.
GenBankKP2834693e-42KP283469.1 Prunus incisa isolate 462-2010A INNER NO OUTER (INO) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340352.11e-165axial regulator YABBY 4-like
SwissprotQ9LDT32e-76YAB4_ARATH; Axial regulator YABBY 4
TrEMBLA0A498I9W91e-144A0A498I9W9_MALDO; Uncharacterized protein
STRINGXP_008340352.11e-164(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61442852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23420.11e-78YABBY family protein
Publications ? help Back to Top
  1. Lora J,Hormaza JI,Herrero M
    Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
    New Phytol., 2015. 208(2): p. 584-95
    [PMID:25991552]
  2. Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
    Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
    BMC Plant Biol., 2016. 16(1): p. 143
    [PMID:27350128]
  3. Simon MK,Skinner DJ,Gallagher TL,Gasser CS
    Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
    Genetics, 2017. 207(4): p. 1489-1500
    [PMID:28971961]