PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000125282
Common NameGRF2
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRF
Protein Properties Length: 600aa    MW: 64898.3 Da    PI: 8.2917
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000125282genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC76.62.5e-24222266145
            WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                    d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  MDP0000125282 222 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVEG 266
                    79****************************************985 PP
2QLQ58.32.3e-20156192137
            QLQ   1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                    ++FT++Q+ +L++Q+l+yKy+ +n+PvP++Ll +++k
  MDP0000125282 156 GPFTPSQWIELEHQALIYKYMTSNVPVPSNLLIPLKK 192
                    59*******************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-11156192IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166622.429157192IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088804.3E-14157190IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.287222266IPR014977WRC domain
PfamPF088797.7E-21223265IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 600 aa     Download sequence    Send to blast
MAEVSGMDFG LMGLEGLVGP XAGGGEAAGK VGDGSGSASA KQQRSWPVDD DWRTSKMPKN  60
EDLNASRTMP LQYQGTPLLR SNSQLLPPPA ETHRQEQMLS FSNNKSEVSF LSKDGDFAYY  120
QRNPTPILSP YPRNAGSPGY GSLNLSMHGP LTGARGPFTP SQWIELEHQA LIYKYMTSNV  180
PVPSNLLIPL KKPLYPYGLS GPSNPTSIAW GAYHLGFSGN NDPEPGRCRR TDGKKWRCSR  240
DAVADQKYCE RHINRGRHRS RKPVEGQPGQ AVSGTSNSKR VPMNSSMSTS VMASNGASNS  300
ITTAPQQFKR LQTAVAANPS SADAFVNRMQ DPRGLSVMSA PTLKPKSNNS TSKLGKQEFL  360
VEESSQSEFG IVSTYSLLNP SHRNSYISKD FGGSFLDFSD QETQDQHPLR QFMDDWPKDQ  420
SSHSVSTWPE EIKSDWTQLS MSIPMASSEF SSSSSSPTHE KLALSPLRLS REFVPAQMNL  480
GMSNDLSESX QKQTNWIPIP WGNSMGGPLG EVITNTTSSG KIXNNSTSPL NLLNEGWDGN  540
SQLGSSPTGV LQKSTFCSLS NSSSGSSPRG GEIKKSSLDG ASIYDDVLGS TFASSPVPSL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.90280.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0561595e-68EU056159.1 Eriobotrya japonica clone ssrEJ102 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950622.10.0growth-regulating factor 1-like isoform X3
TrEMBLD9ZIZ80.0D9ZIZ8_MALDO; GRF domain class transcription factor
STRINGXP_009339386.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20853481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.11e-104growth-regulating factor 1