PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000125184 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 679aa MW: 75532.5 Da PI: 5.8443 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3.1e-19 | 22 | 76 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +k +++t+eq+++Lee F+ + +p+ ++r++L ++lgL+ +q+k+WFqN+R++ k MDP0000125184 22 KKYHRHTNEQIQRLEEXFKHCAHPDDSQRQQLGRELGLEPKQIKFWFQNKRTQTK 76 78999**********************************************9987 PP | |||||||
2 | START | 139.9 | 2.6e-44 | 191 | 413 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 +a +a++elvk+ + +ep+Wvks +n+ + ++f++++ ++e +++sgvv+ +a+lv +ld++ +W e ++ ka+t+ev MDP0000125184 191 IAASALEELVKLFQIDEPLWVKSTaygrYFLNRGNYDKIFPRTNQfktssARIESSKDSGVVTISAATLVDMFLDSN-KWEELFPtivtKAKTIEV 285 678899******************999988899999999988877899999**************************.******99999******* PP ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173 ++sg g l lm+ ++ lsplv Rdf+f+Ry++q + g+wv vdvS +++ ss+ R+ +lpSg+li+++ ng skvtw+ehv+++ MDP0000125184 286 LESGmignrsGCLLLMYEQMHILSPLVLpRDFYFLRYCQQIELGTWVXVDVSHKFPKES--SSNQSRSWRLPSGCLIKDMTNGCSKVTWIEHVEVD 379 **************************966*********************888887775..6899999**************************** PP SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 174 grlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ h l+r l s++a ga +w tl+r ce+ MDP0000125184 380 DKTQtHRLYRDLXCSSVAYGAERWIITLKRMCER 413 *9998***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-20 | 9 | 80 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-17 | 11 | 78 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.779 | 18 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.7E-16 | 20 | 82 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.1E-17 | 22 | 76 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.02E-17 | 22 | 79 | No hit | No description |
PROSITE profile | PS50848 | 45.333 | 181 | 416 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.1E-31 | 182 | 414 | No hit | No description |
CDD | cd08875 | 1.59E-104 | 185 | 412 | No hit | No description |
SMART | SM00234 | 7.5E-31 | 190 | 413 | IPR002913 | START domain |
Pfam | PF01852 | 8.1E-37 | 191 | 413 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 1.6E-8 | 246 | 377 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 6.87E-15 | 441 | 642 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MELSGNGGAS SDEASNSRRG NKKYHRHTNE QIQRLEEXFK HCAHPDDSQR QQLGRELGLE 60 PKQIKFWFQN KRTQTKAQSE RADNTILRQD NERIQCENYA MREALKNVSC PTCGGPPFGE 120 EERQINLQSL QLENAYLKEE AIGSTLDLSP GCSINQGIIG SPPLDLNLTS PTFSYQLQEI 180 PEMEKTLMAD IAASALEELV KLFQIDEPLW VKSTAYGRYF LNRGNYDKIF PRTNQFKTSS 240 ARIESSKDSG VVTISAATLV DMFLDSNKWE ELFPTIVTKA KTIEVLESGM IGNRSGCLLL 300 MYEQMHILSP LVLPRDFYFL RYCQQIELGT WVXVDVSHKF PKESSSNQSR SWRLPSGCLI 360 KDMTNGCSKV TWIEHVEVDD KTQTHRLYRD LXCSSVAYGA ERWIITLKRM CERFDCLMDE 420 VESTCEFGGG KSSLIPLVXS PEGKRSVMKL SQRMVKNFCG MLSMAGKLDF PQLSEVNNSG 480 VRVSVRKSAE SGQPHGMIVS VATSLWLPLP SETVXNFFRD EKNRVQWDVL SNGNPVHEIA 540 NISTGTHPGN CISVIRPFIP TENNMLMLQE SYTDPLGSLF VYAPVDVPAL NVAVSGEDSS 600 NIPILPSGFV ISGDGRAEVT GDSGHSTAGG SLLTVAFQIL VSSPSTSKQM NMESVATVNT 660 LISSTVQKIK VALNCSSLD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During embryo development, expressed in all cells at the 4- and 16-cell embryo stages. Expression is restricted to the protoderm from the globular stage onward. {ECO:0000269|PubMed:25564655}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in apical meristems and young epidermal tissue including trichomes and stipules. Expressed in lateral root tips, the L1 layer of apical inflorescence meristems and early flower primordia, carpel and petal epidermis, stigma papillae, ovule primordia, nucellus and embryo. {ECO:0000269|PubMed:16778018}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which acts as positive regulator of drought stress tolerance. Can transactivate CIPK3, NCED3 and ERECTA (PubMed:18451323). Transactivates several cell-wall-loosening protein genes by directly binding to HD motifs in their promoters. These target genes play important roles in coordinating cell-wall extensibility with root development and growth (PubMed:24821957). Transactivates CYP74A/AOS, AOC3, OPR3 and 4CLL5/OPCL1 genes by directly binding to HD motifs in their promoters. These target genes are involved in jasmonate (JA) biosynthesis, and JA signaling affects root architecture by activating auxin signaling, which promotes lateral root formation (PubMed:25752924). Acts as negative regulator of trichome branching (PubMed:16778018, PubMed:24824485). Required for the establishment of giant cell identity on the abaxial side of sepals (PubMed:23095885). May regulate cell differentiation and proliferation during root and shoot meristem development (PubMed:25564655). {ECO:0000269|PubMed:16778018, ECO:0000269|PubMed:18451323, ECO:0000269|PubMed:23095885, ECO:0000269|PubMed:24821957, ECO:0000269|PubMed:24824485, ECO:0000269|PubMed:25564655, ECO:0000269|PubMed:25752924}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028964478.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q9FX31 | 0.0 | HDG11_ARATH; Homeobox-leucine zipper protein HDG11 | ||||
TrEMBL | A0A251PUX6 | 0.0 | A0A251PUX6_PRUPE; Uncharacterized protein | ||||
STRING | XP_008348615.1 | 0.0 | (Malus domestica) | ||||
STRING | XP_008358175.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 0.0 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000125184 |