PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000124301
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ARR-B
Protein Properties Length: 527aa    MW: 57296.8 Da    PI: 7.0553
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000124301genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like894.3e-28233286155
        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                    kpr++W+ eLH++Fv av+qL G +kA+Pk+ilelm+v+gLt+e+v+SHLQk+Rl
  MDP0000124301 233 KPRVVWSVELHQQFVTAVNQL-GLDKAVPKRILELMNVPGLTRENVASHLQKFRL 286
                    79*******************.********************************8 PP
2Response_reg73.48.9e-25491571109
                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTE CS
   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGa 94 
                    vl+vdD+ + +++l+ +l +  y +v+++++++ al+ll+e++  +D++l D+ mp+mdG++ll++   e  +lp+i+++a g  + + + ++ Ga
  MDP0000124301  49 VLVVDDDTTCLRILELMLLRCLY-QVTTCSEATVALNLLRERKdcFDVVLSDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADGRTSVVMRGIRHGA 142
                    89*********************.***************99999***********************6644.8*********************** PP

                    SEEEESS--HHHHHH CS
   Response_reg  95 kdflsKpfdpeelvk 109
                     dfl Kp++++el +
  MDP0000124301 143 CDFLIKPISEAELKN 157
                    ************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.0E-16029524IPR017053Response regulator B-type, plant
SuperFamilySSF521722.85E-3446168IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.8E-4046181No hitNo description
SMARTSM004489.0E-2947159IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.84848163IPR001789Signal transduction response regulator, receiver domain
PfamPF000729.8E-2249157IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.49E-2650162No hitNo description
PROSITE profilePS5129410.384230289IPR017930Myb domain
SuperFamilySSF466899.85E-20230290IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.4E-30230291IPR009057Homeodomain-like
TIGRFAMsTIGR015572.4E-24233286IPR006447Myb domain, plants
PfamPF002493.2E-7235284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MAALQRVAQS SVSTTASSYG SCKVGGGVLS PSAGIEMAVP NQFPAGLRVL VVDDDTTCLR  60
ILELMLLRCL YQVTTCSEAT VALNLLRERK DCFDVVLSDV HMPDMDGFKL LEHVGLEMDL  120
PVIMMSADGR TSVVMRGIRH GACDFLIKPI SEAELKNIWQ HVVRKKWNGS KELEHSGSLE  180
DNDPHKRGNN DFEYTSSVNE GTEVSLKGHK KRINAKEDDD GDTENDDLST SKKPRVVWSV  240
ELHQQFVTAV NQLGLDKAVP KRILELMNVP GLTRENVASH LQKFRLYLKR LSGVAQQQSG  300
IANPLCGPVD SNGKLGSLSR FDFQALAASG QIPPQTLAAL QAELLGQPAG NLVPAMDQPA  360
LLHASLQAPK RPPVEHGVPF MQPFVKSQSN VSKHFPQSVI SAEDASLGFG QWRSNSRSTV  420
APSNDHGGLS TQNSNLLMGI VPQEQRQHKR TQQQSVLTEP SRSFNVQPSC LVVPSQSSTG  480
FQAGNSPASV NQSSSFNRST VVDYSLPSDQ SNNSLNVGHI PTEILKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21229292164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.163100.0fruit| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028947026.10.0two-component response regulator ORR21-like isoform X2
SwissprotA2XE311e-160ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-160ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A498I5Y10.0A0A498I5Y1_MALDO; Uncharacterized protein
STRINGXP_008389975.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118082433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-110response regulator 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]