PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000124187 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | C2H2 | ||||||||
Protein Properties | Length: 246aa MW: 27923.7 Da PI: 6.8463 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00035 | 168 | 181 | 1 | 14 |
EEETTTTEEESSHH CS zf-C2H2 1 ykCpdCgksFsrks 14 y+Cp C+ksF++ s MDP0000124187 168 YSCPVCSKSFRNMS 181 99********9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51270 | 13.178 | 66 | 130 | IPR017921 | Zinc finger, CTCHY-type |
SuperFamily | SSF161245 | 8.89E-7 | 96 | 124 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 2.5E-14 | 128 | 190 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 1.88E-10 | 129 | 181 | No hit | No description |
Pfam | PF14634 | 3.5E-7 | 130 | 175 | IPR001841 | Zinc finger, RING-type |
PROSITE profile | PS50089 | 11.634 | 131 | 174 | IPR001841 | Zinc finger, RING-type |
CDD | cd00162 | 4.62E-6 | 131 | 177 | No hit | No description |
SMART | SM00184 | 1.0E-6 | 131 | 173 | IPR001841 | Zinc finger, RING-type |
Pfam | PF14599 | 1.3E-27 | 179 | 236 | No hit | No description |
Gene3D | G3DSA:2.20.28.10 | 2.1E-20 | 202 | 240 | IPR004039 | Rubredoxin-type fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MDGGFEPQVS IDDDHSHQKV NSLTDMESGN FGHCHNEAKQ NSLEVDPFDR HNVPRPTISF 60 APCATPNKMF SNTVSSVGFA WETIFAPNAS SLTMIIGGGE NVFHCNKCGC CYSKAMKDSH 120 NCVENVMHHN CPVCFEFLFD TREDITVLRC GHNIHLECVK EMERHYQYSC PVCSKSFRNM 180 SRVWEKLDEE VAGTPMPQKY QNKMVWILCN DCGETSQVNF HIVAHKCLKC KSYNTRKTQR 240 ASVILV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2k2d_A | 4e-17 | 176 | 238 | 7 | 69 | RING finger and CHY zinc finger domain-containing protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1391 | 6e-87 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, leaves, and anthers and stigma of open flowers. {ECO:0000269|PubMed:26508764}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses E3 ubiquitin-protein ligase activity in vitro. Mediates mainly 'Lys-48'-linked polyubiquitination. Promotes abscisic acid (ABA)-induced stomatal closure, reactive oxygen species (ROS) production and drought tolerance (PubMed:26508764). Involved in the regulation of stomatal aperture (PubMed:25002225). {ECO:0000269|PubMed:25002225, ECO:0000269|PubMed:26508764}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced during sucrose starvation. Repressed by sucrose (PubMed:17217462). Induced by cold, drought and salt stresses, and abscisic acid (ABA) (PubMed:26508764). {ECO:0000269|PubMed:17217462, ECO:0000269|PubMed:26508764}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028946598.1 | 1e-120 | E3 ubiquitin-protein ligase RZFP34-like | ||||
Swissprot | Q9FFB6 | 1e-76 | ZFP34_ARATH; E3 ubiquitin-protein ligase RZFP34 | ||||
TrEMBL | A0A498K1D0 | 1e-139 | A0A498K1D0_MALDO; Uncharacterized protein | ||||
STRING | XP_009349743.1 | 1e-116 | (Pyrus x bretschneideri) |
Link Out ? help Back to Top | |
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Phytozome | MDP0000124187 |
Publications ? help Back to Top | |||
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