PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000124053 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | G2-like | ||||||||
Protein Properties | Length: 304aa MW: 33787.7 Da PI: 8.1114 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 27.5 | 6.8e-09 | 20 | 43 | 1 | 24 |
G2-like 1 kprlrWtpeLHerFveaveqLGGs 24 kprl+WtpeLH+rFvea +LG s MDP0000124053 20 KPRLKWTPELHQRFVEAKYRLGKS 43 79*******************755 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.4E-8 | 18 | 47 | IPR009057 | Homeodomain-like |
Pfam | PF14379 | 1.2E-21 | 84 | 130 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVHQNMQNQN MNLVLSTDAK PRLKWTPELH QRFVEAKYRL GKSQQSENSA DIKQEDYKEI 60 QSSDGHFGAD ISDEDHSQIN ESLQIAQSLQ LQMEVQRKLH EQIEVQRHLQ LRIEAQGKYL 120 QSVLKKAQET LSGYSSSSVG VELAKAELTQ LVSMVNNGCP SSSFSELTET GTSTLKDVER 180 KQMRGSMDSS LTSSESSGRK EEKLPKNSNA TCVELPLMGI HPDNKAWNNS ASNHVFGSKR 240 SSSPISDGVS VKQPVAKRTQ TQRDKGGNHL RKSGLLATFD LNSKYQSDNI DSGPKVIDLN 300 CKGI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.12514 | 4e-64 | bud| leaf| root| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008389459.1 | 0.0 | myb family transcription factor PHL8-like | ||||
Swissprot | F4I274 | 2e-57 | PHL8_ARATH; Myb family transcription factor PHL8 | ||||
TrEMBL | A0A498I7Y2 | 0.0 | A0A498I7Y2_MALDO; Uncharacterized protein | ||||
STRING | XP_008389459.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5218 | 32 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69580.1 | 2e-58 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000124053 |
Publications ? help Back to Top | |||
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