PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000123808

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

M-type_MADS

Protein Properties

Length: 203aa MW: 23583 Da PI: 7.0845

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000123808	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	27.6	3.8e-09	1	35	21	50
HHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS SRF-TF 21 lKKAeELSvLCdaevaviifsstg.....klyeys 50 +KKA+E S+LC+ +v++ i ++++ +l++++ MDP0000123808 1 MKKAYEFSTLCELDVCMTICGPKQtgrppELHTWP 35 8********************99833444477776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	4.19E-6	1	53	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.2E-5	1	24	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 203 aa Download sequence Send to blast
MKKAYEFSTL CELDVCMTIC GPKQTGRPPE LHTWPENQNE TKVYVDTYRA RKEMYEAKYP 60 TWDERIESLS ENRLEALLNS LDAKLESGKR TLLHKRNQSA EHYQHICSSS QSRPCNYYKQ 120 DQVNHQEEDK KPMMICSSLL IIIIIIIISS LLIESIVQMN ILSNLLSTLQ LSVGPSSSNS 180 ELPFEGQHIN FNNPMMIQKR WRT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008354940.2	6e-65	agamous-like MADS-box protein AGL3
TrEMBL	A0A498J433	1e-126	A0A498J433_MALDO; Uncharacterized protein
STRING	XP_008358205.1	1e-150	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	3e-10	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	MDP0000123808