PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000123799

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

ZF-HD

Protein Properties

Length: 276aa MW: 30796.9 Da PI: 9.0967

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000123799	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	73.2	3.9e-23	10	61	3	57
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 + +Y+eCl+NhAaslG++a+DGC Ef+ + ++++ +++C A gCHRnFH r + MDP0000123799 10 NEVYRECLRNHAASLGSYATDGCDEFILD---HTSPGSIQCVAYGCHRNFHCRVT 61 678***********************8...6789*************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	8.1E-19	12	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	20.442	13	60	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.0E-17	13	59	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	6.0E-13	13	57	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	9.86E-7	115	168	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.3E-14	117	168	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 276 aa Download sequence Send to blast
MKGDHDPNTN EVYRECLRNH AASLGSYATD GCDEFILDHT SPGSIQCVAY GCHRNFHCRV 60 TYAATSSQAA EGRRSGHHQH HVIMSCSGRC RDLAKNIITQ NQFIDYNVGE GGLLDSGERI 120 SSGKKQFRTK FTAEQKEKML AFAKNLGWKL LRKDLEDEIE RLCKSVGLCW YRSSSGXSWR 180 WSTRTTGLWA PPPAPITMLR FSATLIGSSS SLPFPSPCXA TPIXSSTLCL QRPTXVFLSS 240 VNLRSLTSHT LSNYCNSVQQ SLRVQKCQPI SNQRKP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.13105	0.0	bud\| fruit

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008393463.1	1e-99	zinc-finger homeodomain protein 9-like
TrEMBL	A0A314UWY9	4e-69	A0A314UWY9_PRUYE; Zinc-finger homeodomain protein 11
STRING	XP_008346636.1	1e-119	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7982	28	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14440.2	3e-23	homeobox protein 31

Link Out ? help Back to Top
Phytozome	MDP0000123799