PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000123797

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

LBD

Protein Properties

Length: 216aa MW: 24303.4 Da PI: 4.872

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000123797	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	123.6	1e-38	7	107	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +C aCk+lrrkC+++Cv+apyf+ +q + +fa+vhk+FGasnv+k+l +lp ++r+da+ ++ yeA ar++dPvyG+v+ i++lqqq++ l++e++ MDP0000123797 7 SCGACKFLRRKCTSECVFAPYFCYDQaADHFAAVHKVFGASNVSKMLLHLPVQHRSDAAITMSYEALARMHDPVYGCVSQIFALQQQVAYLQEEIE 102 6**********************9789****************************************************************9 PP DUF260 96 llkee 100 +l+++ MDP0000123797 103 TLGSQ 107 99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.29	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-37	7	104	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MTGLGFSCGA CKFLRRKCTS ECVFAPYFCY DQAADHFAAV HKVFGASNVS KMLLHLPVQH 60 RSDAAITMSY EALARMHDPV YGCVSQIFAL QQQVAYLQEE IETLGSQMVN FTTCHPSNSS 120 NTFTDQLQVL SQNGAEHIQN QLPELPIFPH IGTAAANQGF NSEMDIEMPP VHEWEEVKLF 180 GDHFTPDPLK RFLEGMEQDM LGNNPWSNET ATREFY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-34	3	112	7	115	LOB family transfactor Ramosa2.1
5ly0_B	8e-34	3	112	7	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots. {ECO:0000269\|PubMed:12068116}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. {ECO:0000269\|PubMed:17259263}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008372823.1	1e-164	LOB domain-containing protein 33
Swissprot	Q9LHS8	1e-54	LBD33_ARATH; LOB domain-containing protein 33
TrEMBL	A0A498JF69	1e-163	A0A498JF69_MALDO; Uncharacterized protein
STRING	XP_008372823.1	1e-164	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9196	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	5e-57	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	MDP0000123797

Publications ? help Back to Top
Bargmann BO,Birnbaum KD,Brenner ED An undergraduate study of two transcription factors that promote lateral root formation. Biochem Mol Biol Educ, 2014 May-Jun. 42(3): p. 237-45 [PMID:24615800]