PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000123745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | FAR1 | ||||||||
Protein Properties | Length: 260aa MW: 29899.9 Da PI: 9.9063 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 98.4 | 8e-31 | 42 | 129 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+++ k+ +++r++ra tr gCka+++vkk+k+gkw+vt++ +eHnH+l+ MDP0000123745 42 FYDAYATQVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKTRAKR-TENRKPRAITREGCKAMIVVKKDKSGKWVVTRFIKEHNHPLV 129 9*******************************************99.9***************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-29 | 42 | 129 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MSKDEDVLES SNGKDAVTSE GNSDAEPFVG MEFETEEAAK VFYDAYATQV GFIMRVDAFR 60 RSMRDGKVVW RRLVCNKEGF RKTRAKRTEN RKPRAITREG CKAMIVVKKD KSGKWVVTRF 120 IKEHNHPLVG TPANGRRSML LSQAPEFWFV DEVSRCPLLE XVTRCCHSYD REALVGERKG 180 EIKKGKGRRL ITVTDEKDLK IRELTAELQR ERKRSATYQE QLDMVLREME QHSNHLSRNI 240 DGIVQSVKEI ESKRVAPSNG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008382553.1 | 1e-146 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A498JVF8 | 1e-132 | A0A498JVF8_MALDO; Uncharacterized protein | ||||
STRING | XP_008348960.1 | 1e-145 | (Malus domestica) | ||||
STRING | XP_008382553.1 | 1e-145 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 4e-85 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000123745 |