PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000123172
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 430aa    MW: 47203.7 Da    PI: 7.1352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000123172genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.52.9e-175099255
            AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                   +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  MDP0000123172 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99
                   59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.53E-2150108IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-2950107IPR001471AP2/ERF domain
PfamPF008471.2E-105099IPR001471AP2/ERF domain
PROSITE profilePS5103222.08950107IPR001471AP2/ERF domain
SMARTSM003805.2E-3450113IPR001471AP2/ERF domain
CDDcd000187.21E-3050106No hitNo description
PRINTSPR003672.6E-95162IPR001471AP2/ERF domain
PRINTSPR003672.6E-97389IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEEAFRRMNG FSHASEPDLI TDPPSKSTTA ATNKRALRDT AAAAASGAMR YRGVRRRPWG  60
RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGV KARTNFVYSS SPPTDVVADH  120
PFPHFSFHKH SQPSAKTRNG YGGANHSPSW NSVPFSQYPS PNQTDGYGGA PTPAATSFNM  180
PFLQNFMKYS SPNPSPVYNN QFPYNINGSS SASLVNTTSY GQHHETNISG SAYFPIGSSS  240
SMATAPTSTT TTLPFIDITS PPPTKPTSHD DQHDYSSDFF PTEPAYSGLL EEVIHRFFPK  300
PTKKSSNDDP ISTQDYGHPS SSIQTACFDG SSKRTVGGYS KNDQSQVNVC YNFHELLPLP  360
QPQQHQQGNS LNGLMDHNQQ QVSQPQAVPV YNDHVPFNFQ MGGGADHSMG MDNMFQYPEF  420
TGGFAARVQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-18501061471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLC1017610.0LC101761.1 Pyrus pyrifolia var. culta EBB mRNA for early bud-break, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008340358.10.0ethylene-responsive transcription factor ESR1-like
TrEMBLA0A498HRA90.0A0A498HRA9_MALDO; Uncharacterized protein
STRINGXP_008340358.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13910.18e-14ERF family protein