PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000123097
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 840aa    MW: 93429 Da    PI: 6.0093
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000123097genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.53.5e-21101156156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    +++ +++t++q++e+e++F+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  MDP0000123097 101 KKRYHRHTAHQIQEMENMFKECPHPDDKQRMKLSQELGLKPRQVKFWFQNRRTQMK 156
                    688999***********************************************998 PP
2START162.53.2e-513085352206
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS................SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...............dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                    la +  +el+k+  a+ep+W++    eng+evl  +e ++                +++ea r+s+vv+m++ +lv  +ld + +W e ++    +
  MDP0000123097 308 LAVSSVAELIKMCRAGEPLWSRNN--ENGKEVLNVEEHARIfppwplnlkqqpsdqCRTEATRDSVVVIMNSINLVDAFLDAN-KWMELFPsivsR 400
                    6778899**************999..99999999998877799999*************************************.************ PP

                    EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEE CS
          START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtw 166
                    a+t++vis +      g lqlm+aelq+ splvp R+  f+Ry++q +++g+w+ivd  +ds  ++  +ss+ R ++ pSg+li++++ng+s+vtw
  MDP0000123097 401 AKTVQVISADpsgqanGSLQLMYAELQVVSPLVPtRETHFLRYCQQnEEEGSWAIVDFPIDSFHDNL-QSSFPRYKRWPSGCLIQDMPNGYSRVTW 495
                    *****************************************************************98.9*************************** PP

                    EE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
          START 167 vehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                    +eh+  +++ +h+++ + v sg+a+ga++w+a lqrqce+
  MDP0000123097 496 IEHAQIEEKPVHQIFSHYVYSGMAFGAQRWLAVLQRQCER 535
                    **************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.96E-2090159IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2296163IPR009057Homeodomain-like
PROSITE profilePS5007117.24898158IPR001356Homeobox domain
SMARTSM003892.1E-2099162IPR001356Homeobox domain
CDDcd000861.93E-19101159No hitNo description
PfamPF000461.3E-18101156IPR001356Homeobox domain
PROSITE patternPS000270133156IPR017970Homeobox, conserved site
PROSITE profilePS5084845.774298538IPR002913START domain
SuperFamilySSF559615.63E-32300537No hitNo description
CDDcd088751.73E-115302534No hitNo description
SMARTSM002348.5E-37307535IPR002913START domain
PfamPF018521.3E-43308535IPR002913START domain
SuperFamilySSF559615.13E-14553739No hitNo description
SuperFamilySSF559615.13E-14766804No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    Send to blast
MYGHCQVMSS MAMGGGNVVS PETLFSSPIQ NPNFNFMPTH HQLPFQPFSS ILSPPKEENG  60
VLMMMKGKED QMMESGSGSE QIEEKSGNEQ EADNQLQPPK KKRYHRHTAH QIQEMENMFK  120
ECPHPDDKQR MKLSQELGLK PRQVKFWFQN RRTQMKAQQD RSDNVMLRAE NENLKNENYR  180
LQAALSNIMC PNCKGPAMIA DIGLDEQHLR LENARLREEL ERVFCLNSQY TSGQQIQTMA  240
PGAPLMPAFN LDLDMNIYSR HFQEYPMTSA EMIPMPLLPP HVPSHYPAPA GSWGGVLSDD  300
EKSLAVELAV SSVAELIKMC RAGEPLWSRN NENGKEVLNV EEHARIFPPW PLNLKQQPSD  360
QCRTEATRDS VVVIMNSINL VDAFLDANKW MELFPSIVSR AKTVQVISAD PSGQANGSLQ  420
LMYAELQVVS PLVPTRETHF LRYCQQNEEE GSWAIVDFPI DSFHDNLQSS FPRYKRWPSG  480
CLIQDMPNGY SRVTWIEHAQ IEEKPVHQIF SHYVYSGMAF GAQRWLAVLQ RQCERVASLM  540
ARNISDLGVI PSPEARKNMM KLAQRMIRTF CVSMSTSNGQ SWTAISDSPG DTVRITTRKV  600
TEAGQPIGVI LTAVSTTWLP YSHYRVFELL RDERRRAQPP ALCQQLDVLT NGNSLHEVAH  660
IANGSHPGNC ISLLRINVSS NSSQNIEIML QESCTDESGS LVVYATMDVD GIQLAMSGED  720
PSCIPLLPLG FVIVPVQPME SSAATAADHG TSSPDQNQEK RIMNSGCLLT VGFQVLASTS  780
PSAKLNLSSV TAMNNHLCNS VQQIISALGS SNICTTATTD NVSVGVISGG SDHPTAATPQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960260.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_028960261.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_028960262.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_028960263.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_028960264.10.0homeobox-leucine zipper protein HDG5 isoform X1
RefseqXP_028960265.10.0homeobox-leucine zipper protein HDG5 isoform X1
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A498JPH80.0A0A498JPH8_MALDO; Uncharacterized protein
STRINGXP_008356445.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109463036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7