PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000122897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HB-other | ||||||||
Protein Properties | Length: 610aa MW: 68705.6 Da PI: 10.1762 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 35.2 | 2.2e-11 | 219 | 268 | 8 | 57 |
-HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ q+e+Le+++ +++yps++++e A+ gLt +qV+ WF +R +ek+ MDP0000122897 219 TQLQVEALESFYSEEKYPSQTAMECHAAAFGLTYKQVRGWFVEKRRREKR 268 899*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-10 | 210 | 270 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.3E-5 | 212 | 273 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-11 | 217 | 273 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.97E-7 | 217 | 268 | No hit | No description |
Pfam | PF00046 | 1.1E-8 | 219 | 268 | IPR001356 | Homeobox domain |
PROSITE profile | PS50071 | 12.115 | 219 | 269 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 610 aa Download sequence Send to blast |
MSKNPRPTRS VSPPGSSHLT HRRXSLXCSP PPSSNVDLSS VRHHHHPLGL ISXPHFLNLL 60 LSLTFTLQNS LISTKKPSST TIIFLARFKS EPPKSVFGWL DDHVMCLHGR SEAATVNPLS 120 FGDVKDLKDE XHSESGWXSK PKKEKKRRTY GLVPNRQSMQ ITELTLPTPF FCNSXTAAHA 180 PTSPAALLLE NGGEVSMIFC DFEKLERKGK MMEKIKKKTQ LQVEALESFY SEEKYPSQTA 240 MECHAAAFGL TYKQVRGWFV EKRRREKRGN RTSELGAGAT GIDKHGPSRT KAPPSSRYMK 300 TSLLTKKERM KWNHIQELLT PDYILKKVFR KDGPPLGVEF DSLPSGARCH SPGERLNSLT 360 YGCFVIFKRF SLNVIHTLRR FHSHCNFRLD SPNFLSPCEE NDRATKRRKD CNKSAPVQKH 420 GVGKGLITNH QDCNKRAPVQ KHGVGKGLMT VWQATNPNAR DFPIEMGLAN GEVSSVSLIR 480 TSLSQKPVTR NRRLQPKKCV PMEANNXNQK FPGKEKCELA LEGTGSQEHX DKIAMLVDDE 540 ELEQRELQXR PNSLGCSDHF TNGDHACSLC KDLLAKFPPN SVTMKLPFDM QPWDSSPEIV 600 KKLFKLVVTL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028953128.1 | 0.0 | homeobox-DDT domain protein RLT3-like isoform X1 | ||||
TrEMBL | A0A498H869 | 0.0 | A0A498H869_MALDO; Uncharacterized protein | ||||
STRING | XP_008359978.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6118 | 15 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12750.1 | 3e-50 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | MDP0000122897 |