PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000122728 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | AP2 | ||||||||
Protein Properties | Length: 665aa MW: 73455.9 Da PI: 5.2882 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.8 | 1.3e-08 | 93 | 145 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 s ++GV+++ gr+ A ++d +e k+ g f+ +e+Aa+a++ a++kl+ge MDP0000122728 93 SVFRGVSRHT-EGRFQAFVWDGTEpE---KKGKTGGFDKEEDAARAHDLAALKLWGE 145 689****998.8******99965432...5555688******************997 PP | |||||||
2 | AP2 | 32.1 | 2.9e-10 | 187 | 235 | 1 | 52 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkk 52 s y+GV++ + +++W A++ g ++ +lg+f t+e+Aa+a++ + + MDP0000122728 187 SNYRGVSRISGKKKWQARLGR----GkRHNGLYLGTFETEEQAARAYDIGAIR 235 57****************666....54459******************87766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.56E-14 | 93 | 153 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.8E-4 | 93 | 145 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.99E-15 | 93 | 152 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-13 | 94 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.3E-13 | 94 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.198 | 94 | 152 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 95 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.3E-5 | 134 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.6E-6 | 187 | 230 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.47E-13 | 187 | 248 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.56E-17 | 187 | 248 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-15 | 188 | 247 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-17 | 188 | 252 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.133 | 188 | 246 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MQPQSPSILE SALFETPNYD SFSFLNNPFS SSRPLECDTG LIGENYGKNN AVKIFGGPLM 60 SINEDNKGCT SPMNRQRRHP HQNSKHTIGN KKSVFRGVSR HTEGRFQAFV WDGTEPEKKG 120 KTGGFDKEED AARAHDLAAL KLWGECAKLN FPXEXYKKDL EEMQTMTKQD YFLXIRRASP 180 SFAKGLSNYR GVSRISGKKK WQARLGRGKR HNGLYLGTFE TEEQAARAYD IGAIRTKGTD 240 AATNFDVSEN DVNSILQSEK LPIGEGASKS LKFASSVDDF IQSRRKTNKK TPFLQPYEDH 300 RLGILNRIST QPSSSFQQTT LQTLPIYPND SNCSQYVDPF LQDFQNTDNI QNNQLLQYYS 360 VSPRXQVQXV PAGYQNANFE TNRIFSHWDG NTYGGGNNSV GSAINIGPVI PSQNHELNQF 420 QYYNNDAYGQ KLSQNPNSSY LLQNSHVSAY PQTISPTFLP GLNNLHTCSS YIGECSSSQA 480 EVSLDTILGE TDESLGSDIV SEVVPVADLE VHVNPIERNS ISVLPEDREN GSTGYQNANF 540 ETNPIFSHXD GNTDGRGDNS VGSAINIGPV IPSQNHELNX FQYYNNDAYG QKLSQNPNSS 600 SQAEMSLDTI LGETDGSLGS DMVSEVAPVA DLEVHVNPIE RNSVLPGDRE NGSVVEVSGV 660 SKSGH |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A498I3Y9 | 0.0 | A0A498I3Y9_MALDO; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16506 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 4e-55 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000122728 |