PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000121821 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | LBD | ||||||||
Protein Properties | Length: 157aa MW: 17816.2 Da PI: 6.8577 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.1 | 1.9e-40 | 8 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +CaaC++lrr+C++dCvlapyfp+++p++fa+vhk+FGa n++k+l++lp + re+a++s++yeA r++dPvyG+v++i++lq+++ ++++e+ + MDP0000121821 8 RCAACRFLRRRCPQDCVLAPYFPSSNPERFACVHKIFGAGNITKMLEQLPVHLREAAADSMFYEASLRVEDPVYGCVRIISQLQHHILEAQSEILK 103 6*******************************************************************************************9988 PP DUF260 97 lkee 100 ++ + MDP0000121821 104 TNGQ 107 7765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.717 | 7 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.4E-40 | 8 | 103 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MISNNPTRCA ACRFLRRRCP QDCVLAPYFP SSNPERFACV HKIFGAGNIT KMLEQLPVHL 60 REAAADSMFY EASLRVEDPV YGCVRIISQL QHHILEAQSE ILKTNGQIAS YIAQQQLHQQ 120 QQNVVHGASY QQDMQISEYS GVGWDVQTLA NDSYFHT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-34 | 9 | 111 | 12 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-34 | 9 | 111 | 12 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008380285.1 | 1e-116 | LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 4e-46 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A498HEA6 | 3e-85 | A0A498HEA6_MALDO; Uncharacterized protein | ||||
STRING | XP_008380285.1 | 1e-115 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3697 | 30 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 6e-36 | LOB domain-containing protein 24 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000121821 |