PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000121221

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

SBP

Protein Properties

Length: 279aa MW: 31556.9 Da PI: 9.8397

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000121221	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	85	9.1e-27	115	189	11	78
-TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS.......EEETTT--SS--S-STTTT-------S--- CS SBP 11 lseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr.......fhelsefDeekrsCrrrLakhnerrrkkqa 78 l +ak+yhrrhkvC+vhska+++lv +++ fCqqCsr h+l+e De+krsC + La+hn+rrrk ++ MDP0000121221 115 LGNAKDYHRRHKVCDVHSKATKALVGNVMXLFCQQCSRgltlmdrXHALRELDEGKRSCCTGLAGHNRRRRKMHP 189 789*******************************9644444448************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	19.965	103	187	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	6.28E-24	113	192	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	4.9E-18	114	173	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.1E-15	115	186	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MEREILAIHK GENCPQRIVT CEFCEFPLPA IDLAEHQEVC GNRTELCHLC NRYIRLRERY 60 NHEIRCNGVS DNTAGPSRDA RPAERRQGPP RRQANEFSRK RLIFTVALTG IAVLLGNAKD 120 YHRRHKVCDV HSKATKALVG NVMXLFCQQC SRGLTLMDRX HALRELDEGK RSCCTGLAGH 180 NRRRRKMHPD SAVNGGSLNN ESGSSFAMNV KLKSGILFIC SFANCELRSV VIVDRRSHFV 240 FPVSHXGTHR RRSMVGTYXX VNVLSDSLKG KVHSMPNET

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	8e-16	115	186	20	84	squamosa promoter binding protein-like 4

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mdo.6689	0.0	bud\| cell culture\| fruit\| leaf

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A498JA25	1e-137	A0A498JA25_MALDO; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	2e-25	SBP family protein

Link Out ? help Back to Top
Phytozome	MDP0000121221