PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000121180
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family G2-like
Protein Properties Length: 520aa    MW: 58061.3 Da    PI: 7.7625
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000121180genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.63.2e-294094155
        G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                   k+r++Wt++LHe+Fve+v+ LGG+ kA Pk+il+lm+v+gLt+ hvkSHLQk+R 
  MDP0000121180 40 KTRIQWTQDLHEKFVECVNYLGGAYKAPPKSILKLMNVDGLTIFHVKSHLQKFRN 94
                   68****************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.1643797IPR017930Myb domain
SuperFamilySSF466892.87E-163894IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.3E-254094IPR009057Homeodomain-like
TIGRFAMsTIGR015575.8E-214094IPR006447Myb domain, plants
PfamPF002491.0E-54492IPR001005SANT/Myb domain
PfamPF143793.9E-16125171IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene3DG3DSA:3.30.70.3302.0E-20244352IPR012677Nucleotide-binding alpha-beta plait domain
SuperFamilySSF549283.36E-19272352IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010214.556275366IPR000504RNA recognition motif domain
CDDcd123845.91E-31275350No hitNo description
SMARTSM003609.5E-16276348IPR000504RNA recognition motif domain
PfamPF000763.7E-12277343IPR000504RNA recognition motif domain
SuperFamilySSF549282.42E-23362449IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3302.6E-22364445IPR012677Nucleotide-binding alpha-beta plait domain
PROSITE profilePS5010216.517366443IPR000504RNA recognition motif domain
SMARTSM003606.0E-22367439IPR000504RNA recognition motif domain
PfamPF000762.9E-15368436IPR000504RNA recognition motif domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MNEQKIDCQE RIQQSHDYIS KFVSTSYGYS XSTRHXLLSK TRIQWTQDLH EKFVECVNYL  60
GGAYKAPPKS ILKLMNVDGL TIFHVKSHLQ KFRNSEYPPG SAKGKXEKRT TSNVEPQLDV  120
ETXLHIKKAI QLELDVQQHL HEQLEIQRNL QLRIEEQGKQ LKNIIELQLK TIIDLQLKNS  180
DTTFYEGAPL SSLDDEFIDK MHRGYXRNXD VKKRKLEDAS GNDDDISTNS EDHLRSLLEP  240
LAKSQLVDLL AKLGSQYPSI AEEIKGVASA DPVHRKLFVR GLAWNTSSET LRAAFSEHGE  300
IEEGAVIYEK ASGKSRGYGF ITYKHMESTQ CALRAPSKLI DGRLAVCNLA AEGLSGTPAT  360
LDLTQRKLYI GGLSPNVTSE MLLHFFGRHG DIEEGSVAYD KDTNESRGFG FVTYRAVEAA  420
KKAIDDPQKT LGGRNIIVKL ADSHKGRTVQ TQLPPAMVPM ALPLVPPGYP QPGKAHAGTP  480
PVGYSYPQTI AAYPDSSYPG PQPPYPAQSQ IPYPYYIGKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5en1_A3e-2227544110176Heterogeneous nuclear ribonucleoproteins A2/B1
5ho4_A4e-222754417173Heterogeneous nuclear ribonucleoproteins A2/B1
5wwe_A3e-2227544110176Heterogeneous nuclear ribonucleoproteins A2/B1
5wwf_A3e-2227544110176Heterogeneous nuclear ribonucleoproteins A2/B1
5wwf_C3e-2227544110176Heterogeneous nuclear ribonucleoproteins A2/B1
5wwg_A3e-2227544110176Heterogeneous nuclear ribonucleoproteins A2/B1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369730.10.0PREDICTED: UBP1-associated protein 2A-like
RefseqXP_009369737.10.0PREDICTED: UBP1-associated protein 2A-like
TrEMBLA0A498IGC00.0A0A498IGC0_MALDO; Uncharacterized protein
STRINGXP_008365599.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1083433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06800.12e-56G2-like family protein