PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000120671
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family TCP
Protein Properties Length: 374aa    MW: 41686.2 Da    PI: 9.5091
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000120671genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP912.5e-28611883105
            TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........................ssssas 71 
                    g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   ++ i++l+ +                                 
  MDP0000120671  61 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDITEQDIDKLPPLqvphgfghqfhqpmlnphqvsnslvapF----- 151
                    78*************************************************************7777666655555555443332222220..... PP

            TCP  72 ec...eaesssssasnsssgkaaksaa.kskksqksaa 105
                     +   ++ ++  ++++++ +++ak +  k+++ q++++
  MDP0000120671 152 -FdvnSTFMEADQVDHQEVRDQAKGKSiKTNDGQDDQN 188
                    .1222233333333344444444444423333333332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.7E-2762182IPR005333Transcription factor, TCP
PROSITE profilePS5136927.3562120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MITNSRDKGF QAKQEGHNNN NNNDGSNNSS FHKASSSSTT TSRQWSGFRN PRIVRVSRTF  60
GGKDRHSKVS TVRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVIDWLL DITEQDIDKL  120
PPLQVPHGFG HQFHQPMLNP HQVSNSLVAP FFDVNSTFME ADQVDHQEVR DQAKGKSIKT  180
NDGQDDQNRH DHEGNVGQLL AQKLFPIGSS SIPGMLNNAM AYNYYHNYSE PSTLSLAQFG  240
SHGFPQVPQL DQHHSHMMST NALSFSTPMP SVSQLFFRPP TATPMLFGSY PPYITNPIVE  300
GTSTATDQPR QANHFQFLSS PSNSQNFLAN NALMPPLHSV SSSLKSFPSL VHPKQQLHLN  360
SQNNNGSQPN KDVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-1967121155Putative transcription factor PCF6
5zkt_B4e-1967121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028960083.10.0transcription factor TCP17-like
TrEMBLA0A498JRI10.0A0A498JRI1_MALDO; Uncharacterized protein
STRINGXP_008374644.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-47TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5