PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000120467
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family M-type_MADS
Protein Properties Length: 175aa    MW: 19603.6 Da    PI: 10.55
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000120467genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF688.9e-221053245
                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    +e++s rqvtfskRr g++KKA+EL +LC+ae+av++fs+ gk
  MDP0000120467 10 VVEDSSSRQVTFSKRRSGVFKKANELAILCGAEIAVLVFSPGGK 53
                   689**************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554552.88E-28172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.432161IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-35160IPR002100Transcription factor, MADS-box
CDDcd002657.70E-34273No hitNo description
PRINTSPR004047.7E-21323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-212338IPR002100Transcription factor, MADS-box
PRINTSPR004047.7E-213859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGRRKIEMKV VEDSSSRQVT FSKRRSGVFK KANELAILCG AEIAVLVFSP GGKPFSFGHP  60
NVESIADRFL NEECPKSKFR VSKNDEKAGR LNQQLEDMDS QLEAEKKRGL VLDKAVLKAR  120
GLPLKSKPPS FRELSRADLR KMKASLEALR ETVKERASEV EASSSLLLLA NDRRD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371586.11e-121agamous-like MADS-box protein AGL29
TrEMBLA0A498JYA21e-118A0A498JYA2_MALDO; Uncharacterized protein
STRINGXP_008371586.11e-121(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24242979
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34440.14e-38AGAMOUS-like 29