PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000120315
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family C3H
Protein Properties Length: 310aa    MW: 32970.8 Da    PI: 9.1632
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000120315genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.45.1e-08114138226
                    -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                    kt+lC+ +     Ck+Gd+C+FaHg
  MDP0000120315 114 KTRLCNKYNTVEGCKFGDKCHFAHG 138
                    8*********99************8 PP
2zf-CCCH36.39.4e-12277302127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                    +kt+lC +f + GtC +GdrC+FaHg+
  MDP0000120315 277 FKTKLCENFTK-GTCTFGDRCHFAHGQ 302
                    69*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF146081.86272No hitNo description
PROSITE profilePS501036.5126275IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-13110143IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.32E-8110143IPR000571Zinc finger, CCCH-type
SMARTSM003560.0043112139IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.709112140IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-5114138IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.26E-14174253IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.4E-14182252IPR004088K Homology domain, type 1
SMARTSM003228.3E-10182252IPR004087K Homology domain
PROSITE profilePS5008413.565183247IPR004088K Homology domain, type 1
CDDcd001057.67E-13185247No hitNo description
PfamPF000133.4E-10185249IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.8E-16275306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-9275306IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.206276303IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-8276302IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9277302IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MEFGGGGRKR GRPEAGHFNG NGGFKKSKPE VVLHIMVIYS FFLAFEIKVT EATELVANTS  60
GCPFGEGCHF LHYVPGGIKA VSQMTGSNPT HPPPPRNSAA PPSFPDGSSP PTVKTRLCNK  120
YNTVEGCKFG DKCHFAHGXW ELGRPTAQSY EDPRXGGGFP GRMGGRMEPP PPAHGAVASF  180
GATATAKISV DASLAGAIIG KNGVHSKQIC RVTGAKLSIR EHETDHKLRN IELEGTLDQI  240
KDASAMVREL IGNVSSGAGA HNMRNPAISA SSAASNFKTK LCENFTKGTC TFGDRCHFAH  300
GQEELRRSGM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.138120.0bud| fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375050.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-98C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A498K8X90.0A0A498K8X9_MALDO; Uncharacterized protein
STRINGXP_009375050.10.0(Pyrus x bretschneideri)
STRINGXP_008344684.10.0(Malus domestica)
STRINGXP_008363342.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-55C3H family protein