PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119956
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family ERF
Protein Properties Length: 321aa    MW: 36047.7 Da    PI: 4.4696
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119956genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-19112161154
            AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                    s y+GVr++k +g+W+AeIrd +     +  r +lg+f tae+A ka++a r+++e
  MDP0000119956 112 SPYRGVRQRK-WGKWAAEIRDpF-----KgVRLWLGTFNTAEDASKAYEAKRLEFE 161
                    68*******9.**********55.....45***********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381231.6E-395296IPR017392AP2/ERF transcription factor ERF/PTI6
SuperFamilySSF541719.81E-17112161IPR016177DNA-binding domain
SMARTSM003801.9E-17113167IPR001471AP2/ERF domain
PROSITE profilePS5103219.678113171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-22114161IPR001471AP2/ERF domain
PRINTSPR003673.8E-10114125IPR001471AP2/ERF domain
CDDcd000185.35E-23114160No hitNo description
PfamPF008473.8E-11114162IPR001471AP2/ERF domain
PRINTSPR003673.8E-10136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MAVPRKQRNR MRKSKREPFP DHQSKIMRKV RIICYDPDAT DDSSSSEDEG GRERRFPNNP  60
KRFVREITFC PSAHPKPGTA EPESSSQDSN GVRTPKPSKK AIFTKSHRQS SSPYRGVRQR  120
KWGKWAAEIR DPFKGVRLWL GTFNTAEDAS KAYEAKRLEF EEMLAAATSA SAVVSNQNSY  180
NNVEPVSSED SDSVVSQSSP SCVLDLETSA SNNIRNGADL EKEIADESTN LEELQIPDLG  240
FLDETLGPLH FDQELNLGPE LDSLYLEDFG QLFDNYSSIE DIQIPGFESD EPSSLPDCDF  300
EDLGKDDIAC WLDEPLNIVC Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-14114154344ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.42401e-172fruit| leaf
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008367011.20.0ethylene-responsive transcription factor ERF118-like
RefseqXP_008367012.20.0ethylene-responsive transcription factor ERF118-like
RefseqXP_028947065.10.0ethylene-responsive transcription factor ERF118-like
TrEMBLA0A498IAS30.0A0A498IAS3_MALDO; Uncharacterized protein
STRINGXP_008367011.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.22e-33ERF family protein