PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

MDP0000119544

Organism

Malus domestica

Taxonomic ID

3750

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus

Family

HD-ZIP

Protein Properties

Length: 231aa MW: 26986 Da PI: 8.5913

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
MDP0000119544	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	72	125	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+ ++t++qle Le+ F ++ +++ +++ +L+++lgL+ rq+ vWFqNrRa++k MDP0000119544 72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWK 125 56679************************************************9 PP
2	HD-ZIP_I/II	118.8	2.9e-38	72	161	2	91
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 kk+rl+++q+++LE+sF ee kL+p+rK++l+reLglqprq+avWFqnrRAR+k+kqlE+ y+aLk++yd +++e+++L++ev +L++ l MDP0000119544 72 KKKRLTSDQLESLERSFLEEIKLDPDRKMKLSRELGLQPRQIAVWFQNRRARWKAKQLEHLYDALKQEYDVVSKEKHKLQEEVMKLKTIL 161 9**************9999***************************************************************9766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.84E-19	52	129	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.973	67	127	IPR001356	Homeobox domain
SMART	SM00389	2.5E-17	69	131	IPR001356	Homeobox domain
Pfam	PF00046	1.7E-16	72	125	IPR001356	Homeobox domain
CDD	cd00086	1.05E-15	72	128	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.2E-20	74	134	IPR009057	Homeodomain-like
PRINTS	PR00031	4.0E-5	98	107	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	102	125	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.0E-5	107	123	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.3E-7	127	161	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0010434	Biological Process	bract formation
GO:0010582	Biological Process	floral meristem determinacy
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MDWNTNLRHH VSRPEPSFGF LYNYNCYDHH PPGMEMKHQA MISETSSQGG LVPGMXDRNN 60 HQSSYGCSSQ DKKKRLTSDQ LESLERSFLE EIKLDPDRKM KLSRELGLQP RQIAVWFQNR 120 RARWKAKQLE HLYDALKQEY DVVSKEKHKL QEEVMKLKTI LRDEVARKQV STGYTEISGE 180 ETVESTSVSI RSANKARGTN QHKIAEYNYL YNVEEYNPVS PPFWGNLPSY P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	119	127	RRARWKAKQ

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00486	DAP	Transfer from AT5G03790	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008387470.2	1e-174	putative homeobox-leucine zipper protein ATHB-51 isoform X1
Swissprot	Q9LZR0	1e-53	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A498ICZ7	1e-173	A0A498ICZ7_MALDO; Uncharacterized protein
STRING	XP_008350329.1	1e-173	(Malus domestica)
STRING	XP_008387470.1	1e-173	(Malus domestica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3394	34	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	2e-49	homeobox 51

Link Out ? help Back to Top
Phytozome	MDP0000119544

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]