PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119199
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HSF
Protein Properties Length: 440aa    MW: 49929.5 Da    PI: 5.0906
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119199genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.23.5e-35491402102
                    HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXX CS
   HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelleki 97 
                    Fl+k+y++++d++ ++++sws++g sfvv+d++ f  ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i
  MDP0000119199  49 FLNKTYDMVDDPDSNRVVSWSREGGSFVVWDPHAFVMSLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFVRGQKHLLKNI 135
                    9****************************************************************999.........******************* PP

                    XXXXX CS
   HSF_DNA-bind  98 krkks 102
                    +r+k 
  MDP0000119199 136 RRRKA 140
                    **986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3845138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.28E-3545138IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6145138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-194972IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.3E-3249138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-198799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-19100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MNYLYPVKEE YPGSSSSSSQ SGPDFDPMVM MIPPPQPMEG LNDTGPPPFL NKTYDMVDDP  60
DSNRVVSWSR EGGSFVVWDP HAFVMSLLPR YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA  120
NEGFVRGQKH LLKNIRRRKA PSQPFPAQQT VSTCVELGQF GLDGEVDRLR RDKQVLIMEL  180
VKLGQQQQST RAYLQAMEQR LQKTEMKQRQ MMAFLARAMQ NPAFIQQLVQ HKEKRKELEE  240
AMTKKRRRPI DQGPSGVGGG ESGLRGKGIN PVKNEPLEFG DCEYEMSELE ALAMEMQGLG  300
KVRKEQEEVV EPLDSGDKEL DEGFWEELFS ERFKGDLTVP SAEVGEDEDV IILADRLGYI  360
VDWFMSDMVL SSVTSSAVDS QKLMKTGSEY ESNSTKSTNS IDGGVISTAQ VYSCNILILT  420
HKNQKDILRG KSEFWITRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-244713818120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1233247KRKELEEAMTKKRRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.231590.0bud| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272372e-54AB627237.1 Malus x domestica mRNA, microsatellite: MEST080, clone: FRT01_22_F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008386414.10.0heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A498IS900.0A0A498IS90_MALDO; Uncharacterized protein
STRINGXP_008386414.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-111heat shock transcription factor A6B