PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119183
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 451aa    MW: 50286.5 Da    PI: 6.7746
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119183genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS45.11.7e-14165223261320
           GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerle 320
                    l ++s+lfd+le+++p+++ eri +Ere++g++++nv+aceg+e r r +t+++W+  + 
  MDP0000119183 165 LFHFSTLFDMLEMNVPHDAPERILIEREVFGKQAMNVIACEGSE-RLRDQTYRQWQGFIA 223
                    899*****************************************.678889****97665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035145.8E-12165223IPR005202Transcription factor GRAS
SuperFamilySSF533351.09E-15237445IPR029063S-adenosyl-L-methionine-dependent methyltransferase
PfamPF017282.9E-31237444IPR002877Ribosomal RNA methyltransferase FtsJ domain
Gene3DG3DSA:3.40.50.1501.6E-33237446IPR029063S-adenosyl-L-methionine-dependent methyltransferase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0032259Biological Processmethylation
GO:0008168Molecular Functionmethyltransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MGNHPRTAIL VMWFSKYINQ IPMEEKTEIY HEPAAFEAAE QSFYELLGED HSXSPPCDMT  60
SYADQNNESR DECHPWLSSD YNTTSWIGFG VAICVSTNPC MFLLSPILCH SMPHRMEVIV  120
NLESNTMLLN EGKADAIRMG AERLSFFFSN KTIMEVAEKA TRMGLFHFST LFDMLEMNVP  180
HDAPERILIE REVFGKQAMN VIACEGSERL RDQTYRQWQG FIAKKKAGKE TERKKGLLQM  240
QKQYKLITPG SSVLDLGCAP GAWLQVACQS LGPLKNGGLV VGIDLKKVKV PAEHCDSRVQ  300
TVCADVMKLP RAHVRELSPQ MQDRNREEIH GFAIVFVQQK GFSVVLSDMC PLVSGISSKD  360
AALSLELGMQ ALNLAVGGAA LAHSNNEIQT EESNDGTTTI SDDNGVLRRG EINKICKPLF  420
RKASLLRPKA TRSSSREIYL ICQGLQSQAK T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008371842.11e-135uncharacterized protein LOC103435221 isoform X3
TrEMBLA0A498JHT71e-126A0A498JHT7_MALDO; Uncharacterized protein
STRINGXP_008371830.11e-130(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-16GRAS family protein