PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000119093
Organism
Malus domestica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family GRAS
Protein Properties Length: 751aa    MW: 84124.1 Da    PI: 7.4637
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000119093genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.23.1e-1173787491374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    l++lL++cA+a +++d++ a++lL ++++++sp gd +qRla++f+++L+arla+++s++yk l +++ts    ++ l+a++l+  +sP+ k+s++
  MDP0000119093 378 LRTLLISCAQAAAADDHRTANELLRKVRQHSSPFGDGTQRLAHCFANGLEARLAGTGSQIYKGLVSKRTS---AADILKAYHLYLAASPFKKMSNF 470
                    6789************************************************************999999...9********************** PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledle 190
                    + N +I + +e+++r+H+iDf+i +G+QWp+L+q ++ R++gpp++RiTg++ p++g   +e++eetg+rLa +Ae+++vpfe+n+ +ak++e+++
  MDP0000119093 471 VSNVTIRNLAEKSTRLHVIDFGILYGFQWPTLIQRISWREGGPPKVRITGIEFPQPGfrPAERVEETGRRLAAYAENFKVPFEYNA-IAKKWETIT 565
                    ********************************************************9*****************************.7******** PP

           GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    leeL+++++E+l+Vn++++ ++lldesvs++s r++vL l+++++P+++++   +  +n++ F++rf eal ++salfd+le+ +pre++er+ +E
  MDP0000119093 566 LEELKIDKDEVLVVNFIYRGKNLLDESVSVDSVRNRVLALIRRINPDIFIHGIVNGAYNAPFFVTRFREALFHFSALFDMLETVVPREDQERMXIE 661
                    ************************************************************************************************ PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +e++gre++nv+aceg er+er et+++W+ r  +aGF+++p++ + +k a   ++  + + + ++e+s++l++gWk+r+++++SaW+
  MDP0000119093 662 KEIFGREAMNVIACEGWERVERPETYKQWQVRNLRAGFEQIPFDRELVKRAAKKVSSLYHKDFVIDENSQWLLQGWKGRTVFALSAWK 749
                    ****************************************************9999999888*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.313352729IPR005202Transcription factor GRAS
PfamPF035141.1E-114378749IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 751 aa     Download sequence    Send to blast
MAMDPRLRAF SDSFNGVQLG NQPLPILSQP TVVAGSRFDS KXCLDNNYRN FDYPQPGLTP  60
NSVSSFSSVS PEDDSAEDCD FSDVVLKYIN QMLMEEDMEE KTCMLQESLE LQAAEKSFYE  120
VLGKKYPPSP DLYRGYASQY GESPGESSSG TWSNYITSSC NSGGYFGDNS SIQSPDGYSS  180
QLQGLQDYSV SQSFSGSSTR VSSLDGLVDA PSSSIYTPDL KTESQSIWQF RKGVEEASRF  240
LPSETNLVVD LEANGMSVRV PNVGTGAPFV KAERKDGGGY SSGRSRGKKN LYRDDEDVEE  300
KRSSKQAAVS SESPLRSEMF DVVLLCSTGE GRERLGSLRE ALQNGMSKSV PQNRQSTGSN  360
RGKGRGKKLS VKKEVVDLRT LLISCAQAAA ADDHRTANEL LRKVRQHSSP FGDGTQRLAH  420
CFANGLEARL AGTGSQIYKG LVSKRTSAAD ILKAYHLYLA ASPFKKMSNF VSNVTIRNLA  480
EKSTRLHVID FGILYGFQWP TLIQRISWRE GGPPKVRITG IEFPQPGFRP AERVEETGRR  540
LAAYAENFKV PFEYNAIAKK WETITLEELK IDKDEVLVVN FIYRGKNLLD ESVSVDSVRN  600
RVLALIRRIN PDIFIHGIVN GAYNAPFFVT RFREALFHFS ALFDMLETVV PREDQERMXI  660
EKEIFGREAM NVIACEGWER VERPETYKQW QVRNLRAGFE QIPFDRELVK RAAKKVSSLY  720
HKDFVIDENS QWLLQGWKGR TVFALSAWKP A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5038575026380Protein SCARECROW
5b3h_A1e-5038575025379Protein SCARECROW
5b3h_D1e-5038575025379Protein SCARECROW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008350438.20.0scarecrow-like protein 9
RefseqXP_017181862.20.0scarecrow-like protein 9
SwissprotO809330.0SCL9_ARATH; Scarecrow-like protein 9
TrEMBLA0A498IBE60.0A0A498IBE6_MALDO; Uncharacterized protein
STRINGXP_008350438.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein