PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000050082
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93081 Da    PI: 6.4095
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000050082genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-182482357
                   --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
       Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                   k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  MDP0000050082 24 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82
                   6789*****************************************************97 PP

2START169.13e-531733792203
                    HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
          START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                    +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  e+l  i  g  g+++l +
  MDP0000050082 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRKSWFRDCRCLEVLSLIPAGngGTIELVY 267
                    68999*****************************************************.7788888877****************9999******* PP

                    EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS
          START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187
                    ++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s +  p    s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s
  MDP0000050082 268 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPPgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYES 363
                    ****************************************9988899************************************************* PP

                    HHHHHHHHHHHHTXXX CS
          START 188 glaegaktwvatlqrq 203
                    + + ++kt+ ++l++ 
  MDP0000050082 364 SKILAQKTTISALRHI 379
                    ***********99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-19882IPR009057Homeodomain-like
PROSITE profilePS5007115.6941983IPR001356Homeobox domain
SMARTSM003894.2E-152187IPR001356Homeobox domain
PfamPF000464.4E-162482IPR001356Homeobox domain
CDDcd000863.01E-162484No hitNo description
SuperFamilySSF466891.58E-162485IPR009057Homeodomain-like
CDDcd146863.72E-676115No hitNo description
PROSITE profilePS5084826.76163364IPR002913START domain
CDDcd088751.83E-69167383No hitNo description
Gene3DG3DSA:3.30.530.208.4E-23171377IPR023393START-like domain
SMARTSM002341.3E-48172382IPR002913START domain
SuperFamilySSF559611.26E-36173384No hitNo description
PfamPF018527.0E-51173380IPR002913START domain
PfamPF086702.7E-48706850IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MALVMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLR RQQLIRECPI  60
LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLTAMN KLLMEENDRL QKQVSHLVYE  120
NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP QRDANNPAGL LAIAEETLAE  180
FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRK  240
SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE  300
RSLTSSTGGP PGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL  360
YESSKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA  420
DDGWTLMGSD GVEDVTIAIN SSPKVLGSQY NTSIFPPFGG GVLCAKASML LQSVPPALLV  480
RFLREHRAEW ADYGVDAYSA ACLKASPYAV PLARGGGFPS TQNILPLAQT VEHEEFLEVV  540
RLEGPAFSPE DVALTRDMYL LQLCSGVDEN AVGACAQLVF APIDESFADD APLLPSGFHV  600
IPLDPKADGP TATRTLDLAS TLEVGTSGAR AINDADGNSY NRRSVLTIAF QFTFENHLRD  660
NVAAMARQYV RSVVSSVQRV AMAIAPSPLS SQIGPKPLPG CPEAHTLARW IFRSFRIHTG  720
GELFRVDISS SDAILKQLWR HSDAIMCCSV KTNTSPVFTF ANQAGLDMLE TTLVALQDIM  780
LDKILDEAGR KFLCSEFSKI MQQGFAYLPA GICASSMGRP VSYEQAVAWK VVNDDDSNHC  840
LALMFMNWSF M
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mdo.19290.0bud| fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ1774240.0FJ177424.1 Malus x domestica putative PHV HD-ZIPIII mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008349150.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A498IX700.0A0A498IX70_MALDO; Uncharacterized protein
STRINGXP_008349150.10.0(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]