PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000050082 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 851aa MW: 93081 Da PI: 6.4095 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 24 | 82 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ MDP0000050082 24 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 82 6789*****************************************************97 PP | |||||||
2 | START | 169.1 | 3e-53 | 173 | 379 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ e+l i g g+++l + MDP0000050082 173 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRKSWFRDCRCLEVLSLIPAGngGTIELVY 267 68999*****************************************************.7788888877****************9999******* PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvks 187 ++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p s+s+vRae+lpSg+li+p+++g+s + +v+hvdl++++++++lrsl++s MDP0000050082 268 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVVCERSLTSSTGGPPgptSASFVRAEMLPSGYLIRPCEGGGSIINIVDHVDLDAWSVPEVLRSLYES 363 ****************************************9988899************************************************* PP HHHHHHHHHHHHTXXX CS START 188 glaegaktwvatlqrq 203 + + ++kt+ ++l++ MDP0000050082 364 SKILAQKTTISALRHI 379 ***********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-19 | 8 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.694 | 19 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.2E-15 | 21 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.4E-16 | 24 | 82 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.01E-16 | 24 | 84 | No hit | No description |
SuperFamily | SSF46689 | 1.58E-16 | 24 | 85 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 3.72E-6 | 76 | 115 | No hit | No description |
PROSITE profile | PS50848 | 26.76 | 163 | 364 | IPR002913 | START domain |
CDD | cd08875 | 1.83E-69 | 167 | 383 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 8.4E-23 | 171 | 377 | IPR023393 | START-like domain |
SMART | SM00234 | 1.3E-48 | 172 | 382 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.26E-36 | 173 | 384 | No hit | No description |
Pfam | PF01852 | 7.0E-51 | 173 | 380 | IPR002913 | START domain |
Pfam | PF08670 | 2.7E-48 | 706 | 850 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MALVMHRDSP GSSSGGRQQM DSSKYVRYTP EQVEALERVY SECPKPSSLR RQQLIRECPI 60 LSNIEPKQIK VWFQNRRCRE KQRKESSRLQ TVNRKLTAMN KLLMEENDRL QKQVSHLVYE 120 NGFMKQQLHT ASGTTTDNSC ESVVMSGQHQ QQQNPTPQHP QRDANNPAGL LAIAEETLAE 180 FLSKATGTAV DWVQMIGMKP GPDSIGIVAV SRNCSGVAAR ACGLVSLEPT KVAEILKDRK 240 SWFRDCRCLE VLSLIPAGNG GTIELVYMQT YAPTTLAAAR DFWTLRYTTS LEDGSLVVCE 300 RSLTSSTGGP PGPTSASFVR AEMLPSGYLI RPCEGGGSII NIVDHVDLDA WSVPEVLRSL 360 YESSKILAQK TTISALRHIR QIAQESSGEI QHGGGRQPAV LRTFCQRLCS GFNDAVNGFA 420 DDGWTLMGSD GVEDVTIAIN SSPKVLGSQY NTSIFPPFGG GVLCAKASML LQSVPPALLV 480 RFLREHRAEW ADYGVDAYSA ACLKASPYAV PLARGGGFPS TQNILPLAQT VEHEEFLEVV 540 RLEGPAFSPE DVALTRDMYL LQLCSGVDEN AVGACAQLVF APIDESFADD APLLPSGFHV 600 IPLDPKADGP TATRTLDLAS TLEVGTSGAR AINDADGNSY NRRSVLTIAF QFTFENHLRD 660 NVAAMARQYV RSVVSSVQRV AMAIAPSPLS SQIGPKPLPG CPEAHTLARW IFRSFRIHTG 720 GELFRVDISS SDAILKQLWR HSDAIMCCSV KTNTSPVFTF ANQAGLDMLE TTLVALQDIM 780 LDKILDEAGR KFLCSEFSKI MQQGFAYLPA GICASSMGRP VSYEQAVAWK VVNDDDSNHC 840 LALMFMNWSF M |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.1929 | 0.0 | bud| fruit| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ177424 | 0.0 | FJ177424.1 Malus x domestica putative PHV HD-ZIPIII mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008349150.1 | 0.0 | homeobox-leucine zipper protein HOX32 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A498IX70 | 0.0 | A0A498IX70_MALDO; Uncharacterized protein | ||||
STRING | XP_008349150.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5176 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000050082 |
Publications ? help Back to Top | |||
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