PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000046392 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 733aa MW: 80523.6 Da PI: 5.8649 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62 | 9.2e-20 | 65 | 120 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k MDP0000046392 65 RKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 120 789999***********************************************998 PP | |||||||
2 | START | 215.6 | 1.8e-67 | 253 | 475 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS START 1 elaeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 ela +a++el+++a+ ++p+Wv e++n+de+l++f+++ + ++ea+r+s +v+m++++lve+l+d++ qW++ + +a+t MDP0000046392 253 ELAVAAMEELIRMAQDGDPLWVPGDhnsiqkEILNEDEYLRTFPRGIGpkilgLKSEASRESELVIMNHVNLVEILMDVN-QWSTIFCgvvsRAMT 347 57899*****************877788999**************999********************************.******99999**** PP EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-E CS START 82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehv 170 l+ +s+g galq+m+ae+q++splvp R+ +fvRy++q+ +g+w++vdvS+d+ ++ p + R++++pSg+li++++ng+skvtwvehv MDP0000046392 348 LDILSTGvagnynGALQVMTAEFQVPSPLVPtRENYFVRYCKQQVDGTWAVVDVSLDNLRPSP----ISRSRRRPSGCLIQELPNGYSKVTWVEHV 439 *************************************************************99....69*************************** PP E--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 171 dlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++r +h+++r+lv+sgla+gak+wvatl+rqce+ MDP0000046392 440 EVDDRAVHNIYRPLVNSGLAFGAKRWVATLDRQCER 475 **********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.21E-19 | 47 | 122 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 51 | 116 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.763 | 62 | 122 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-19 | 63 | 126 | IPR001356 | Homeobox domain |
CDD | cd00086 | 8.80E-19 | 64 | 123 | No hit | No description |
Pfam | PF00046 | 2.2E-17 | 65 | 120 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 97 | 120 | IPR017970 | Homeobox, conserved site |
SuperFamily | SSF55961 | 2.57E-34 | 244 | 477 | No hit | No description |
PROSITE profile | PS50848 | 44.574 | 244 | 478 | IPR002913 | START domain |
CDD | cd08875 | 2.21E-125 | 248 | 474 | No hit | No description |
SMART | SM00234 | 5.1E-67 | 253 | 475 | IPR002913 | START domain |
Pfam | PF01852 | 1.3E-56 | 254 | 475 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.0E-6 | 358 | 475 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 5.79E-26 | 496 | 727 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009845 | Biological Process | seed germination | ||||
GO:0009913 | Biological Process | epidermal cell differentiation | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 733 aa Download sequence Send to blast |
MFQPSMFDSH HILDHMTTSS THKTSDSTGR LLEDDFETKS GTETTMDIPS GDEQDPNTTG 60 PRPKRKRYHR HTQLQIQEME AFFKECPHPD DKQRKELSRE LGLEPLQVKF WFQNKRTQMK 120 AQHERHENSI LKSENDKLRX ENNRYKEALG NATCPNCGGP ASIGEMSFDE QHLRIENARL 180 REEIDRISSI AAKYVGKPLT SSFSSHVPSR SLDLGVGNFG TQPGFVGEMY GSSSDFLRTV 240 SVPTEADKPM IVELAVAAME ELIRMAQDGD PLWVPGDHNS IQKEILNEDE YLRTFPRGIG 300 PKILGLKSEA SRESELVIMN HVNLVEILMD VNQWSTIFCG VVSRAMTLDI LSTGVAGNYN 360 GALQVMTAEF QVPSPLVPTR ENYFVRYCKQ QVDGTWAVVD VSLDNLRPSP ISRSRRRPSG 420 CLIQELPNGY SKVTWVEHVE VDDRAVHNIY RPLVNSGLAF GAKRWVATLD RQCERLASSM 480 ASNIPAGDLC VITSTEGRKS MLKLAQRMVM SFCTGVGAST AHAWTTLSAT GSDDVRVMTR 540 KSMDDPGRPP GIVXSAATSF WIPVPPKRVF DFLRDENSRS EWDILSNGGL VQEMAHIANG 600 RDPGNCVSLL RVNSANSSQS NMLILQESCT DSTGSYVIYA PVDIVAMNVV LSGGDPDYVA 660 LLPSGFAILP DGAAGSAGGG ILDVGSGGSL LTVAFQILVD SVPTAKLSLG SVATVNNLIK 720 CTVERIRAAV TCD |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Specifically expressed in the layer 1 (L1) of shoot meristems. {ECO:0000269|PubMed:12505995}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the L1 box DNA sequence 5'-TAAATG[CT]A-3'. Plays a role in maintaining the identity of L1 cells, possibly by interacting with their L1 box or other target-gene promoters. Functionally redundant to ATML1. {ECO:0000269|PubMed:12505995}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008371114.2 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Refseq | XP_028959130.1 | 0.0 | homeobox-leucine zipper protein MERISTEM L1-like | ||||
Swissprot | Q93V99 | 0.0 | PDF2_ARATH; Homeobox-leucine zipper protein PROTODERMAL FACTOR 2 | ||||
TrEMBL | A0A498JWB0 | 0.0 | A0A498JWB0_MALDO; Uncharacterized protein | ||||
STRING | XP_008371114.1 | 0.0 | (Malus domestica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1508 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 0.0 | protodermal factor 2 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000046392 |
Publications ? help Back to Top | |||
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