PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000023799 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 198aa MW: 22091.3 Da PI: 6.6529 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 103.6 | 1.3e-32 | 64 | 119 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 vrY+eClkNhA+++Ggha+DGCgEf+++ g+egt++alkCaAC+CHRnFHR+e+e MDP0000023799 64 MVRYRECLKNHAVTIGGHALDGCGEFLSA-GDEGTIDALKCAACNCHRNFHRKESEG 119 79**************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.6E-29 | 65 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-23 | 66 | 118 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.3E-29 | 66 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.049 | 67 | 116 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 3.82E-15 | 130 | 197 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 1.1E-24 | 138 | 192 | IPR006455 | Homeodomain, ZF-HD class |
Gene3D | G3DSA:1.10.10.60 | 5.6E-26 | 141 | 197 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MEFDEHEEQD EEMEMQAAPP GYASVAESSR PKMGPAGEET VSSARKRGTA AAPNSTTTTT 60 LATMVRYREC LKNHAVTIGG HALDGCGEFL SAGDEGTIDA LKCAACNCHR NFHRKESEGE 120 LIHHHQGAGX ALHHHHQHQF SSFTQEQKEK MLEFAEKVGW RIQKHDEAAI EEFCGETGVK 180 RHVFKVWMHN NKHTLGKK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-23 | 141 | 194 | 22 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in flowers and, to a lower extent, in inflorescence, stems and leaves. {ECO:0000269|PubMed:16428600}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein. Putative transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010272957.1 | 2e-72 | PREDICTED: zinc-finger homeodomain protein 1-like | ||||
Swissprot | Q9SB61 | 1e-54 | ZHD2_ARATH; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A0A314XKB3 | 2e-83 | A0A314XKB3_PRUYE; Zinc-finger homeodomain protein 2 | ||||
STRING | XP_010272957.1 | 6e-72 | (Nelumbo nucifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60480.1 | 4e-33 | homeobox protein 26 |
Link Out ? help Back to Top | |
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Phytozome | MDP0000023799 |
Publications ? help Back to Top | |||
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