PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | MDP0000013331 | ||||||||
Common Name | MADS5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 238aa MW: 27911.8 Da PI: 8.6973 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.2 | 7e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCda+va+i+fs++gkl+ey++ MDP0000013331 9 KRIENKINRQVTFSKRRTGLLKKAHEISVLCDAQVALIVFSNKGKLFEYAT 59 79***********************************************86 PP | |||||||
2 | K-box | 98.7 | 8.5e-33 | 81 | 174 | 7 | 100 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 ++ + + + +++ e+++Lk++ e Lqr++Rh+lGedL+sL+lke+q+LeqqL+++lk+iR +Kn+l+ e+i+elq+k k++qeen+ L kk++e MDP0000013331 81 VEPDFESQGNWTFEYSRLKAKAEVLQRNHRHYLGEDLDSLTLKEIQNLEQQLDTALKQIRLRKNQLMNESISELQRKRKAIQEENNLLAKKIKE 174 5545566789*********************************************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.352 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-34 | 2 | 91 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.12E-42 | 2 | 79 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.3E-28 | 87 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 16.212 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009933 | Biological Process | meristem structural organization | ||||
GO:0010076 | Biological Process | maintenance of floral meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRTGLLK KAHEISVLCD AQVALIVFSN KGKLFEYATD 60 SCMEQILERY ERYSYAERQL VEPDFESQGN WTFEYSRLKA KAEVLQRNHR HYLGEDLDSL 120 TLKEIQNLEQ QLDTALKQIR LRKNQLMNES ISELQRKRKA IQEENNLLAK KIKEKEKAAA 180 QPQVQNWEQQ NHGLDLLPQP LPCLNNGGTQ QDEFLQVRRN QLDLTLEPLY ECHLGCFA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 2e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mdo.25244 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00096 | ChIP-seq | Transfer from AT1G69120 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ000759 | 0.0 | AJ000759.1 Malus domestica mRNA for MADS-box protein, MADS5. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009356440.1 | 1e-164 | PREDICTED: truncated transcription factor CAULIFLOWER A-like | ||||
Swissprot | Q6E6S7 | 1e-134 | AP1_VITVI; Agamous-like MADS-box protein AP1 | ||||
TrEMBL | O82695 | 1e-174 | O82695_MALDO; MADS-box protein | ||||
STRING | XP_009356440.1 | 1e-164 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF588 | 32 | 119 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-104 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | MDP0000013331 |
Publications ? help Back to Top | |||
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