PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP28610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34003.4 Da PI: 9.3804 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.9 | 4e-36 | 46 | 188 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgk 72 +p+G++F+Ptd+el+ e+L++kv++++ ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+ GSMUA_AchrUn_randomP28610_001 46 MPAGVKFDPTDQELI-EHLEAKVKAQDlrshplIDEFIpTIEGEdGICYTHPEKLP-GVRRDGLSKHFFHRPSKAYTTGT 123 699************.99*********6665443333333666646**********.566677799************** PP NAM 73 rknra........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 rk+r+ + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l GSMUA_AchrUn_randomP28610_001 124 RKRRKiqsecdlhRGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKHRKPEKTNWVMHQYHL 188 ****85666665433788************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.29E-38 | 41 | 207 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.074 | 46 | 207 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-17 | 47 | 188 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNTSPIGSVS SSSLIDAKLE EQRVGVSEQC PRCGHKLDRK PDWVGMPAGV KFDPTDQELI 60 EHLEAKVKAQ DLRSHPLIDE FIPTIEGEDG ICYTHPEKLP GVRRDGLSKH FFHRPSKAYT 120 TGTRKRRKIQ SECDLHRGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKHRKPEKTN 180 WVMHQYHLGE FEDEKEGELV VSKIFYQTQP RQCNWSSDRS PAAAAAAAME GMDQRRDGRS 240 GSSCSKAASK RDEHSSGGGG ISGYSSMEMH QHLKPDNFSF APFRESYSEV ISRNKGLIRF 300 C |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-12 | 44 | 188 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242227 | 4e-39 | AK242227.1 Oryza sativa Japonica Group cDNA, clone: J075175B09, full insert sequence. | |||
GenBank | JQ088096 | 4e-39 | JQ088096.1 Oryza sativa Japonica Group NAC transcription factor 85 (NAC85) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018676655.1 | 0.0 | PREDICTED: NAC domain-containing protein 73-like isoform X2 | ||||
Swissprot | Q9M0F8 | 1e-132 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | M0UD69 | 0.0 | M0UD69_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP28610_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1453 | 38 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-130 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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