PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP27010_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 267aa    MW: 31144.6 Da    PI: 5.7979
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP27010_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.85.8e-192269148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+WT eEd+ll ++++ +G g+W+++ar+ g++Rt+k+c++rw++yl
  GSMUA_AchrUn_randomP27010_001 22 KGPWTVEEDLLLMNYIAVHGEGRWNSVARCSGLKRTGKSCRLRWLNYL 69
                                   79********************************************97 PP

2Myb_DNA-binding51.52.4e-1676118246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g+ T+eE++l+++++  +G++ W++Ia++++ gRt++++k++w++
  GSMUA_AchrUn_randomP27010_001  76 GNITPEEQLLILELHSSWGNR-WSKIAQHLP-GRTDNEIKNYWRT 118
                                    678******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.5721773IPR017930Myb domain
SuperFamilySSF466891.39E-3120116IPR009057Homeodomain-like
SMARTSM007171.2E-152171IPR001005SANT/Myb domain
PfamPF002497.9E-172269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-232376IPR009057Homeodomain-like
CDDcd001674.18E-112469No hitNo description
SMARTSM007177.8E-1574122IPR001005SANT/Myb domain
PROSITE profilePS5129418.91174124IPR017930Myb domain
PfamPF002494.2E-1576118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2377122IPR009057Homeodomain-like
CDDcd001677.07E-1179118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MELHDDARSS DSPSSEEDDL RKGPWTVEED LLLMNYIAVH GEGRWNSVAR CSGLKRTGKS  60
CRLRWLNYLR PDVRHGNITP EEQLLILELH SSWGNRWSKI AQHLPGRTDN EIKNYWRTKV  120
QKHAKQLQCD VNSKQFKDIM RYLWMPRLME RIRAASVHQH ERIANSETHE LVQEKSSAFG  180
SSDAESFEMQ DPSPAASDCF AVSTQGSDHD MTGDWFEKSQ FSTWWRETLP SPGSYDDVFG  240
LVDFDQSRWG QSLFGMDDDM WLRRQQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24191224106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387805.10.0PREDICTED: transcription factor MYB57
SwissprotQ10MB47e-88MYB2_ORYSJ; Transcription factor MYB2
TrEMBLM0UCQ90.0M0UCQ9_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP27010_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.12e-79myb domain protein 78
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]