PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP24820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 295aa    MW: 31986.9 Da    PI: 6.9813
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP24820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.62.6e-28118178158
                                    ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                           WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                    +dDgy+WrKYGqK++ g+++pr+YYrCt++   gC+++k+v+rs edp v+++tY g+H++
  GSMUA_AchrUn_randomP24820_001 118 VDDGYSWRKYGQKDILGAKHPRAYYRCTHRssqGCQATKQVQRSGEDPLVFDVTYLGTHTC 178
                                    59***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.986113176IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-28115179IPR003657WRKY domain
SuperFamilySSF1182909.15E-26117178IPR003657WRKY domain
SMARTSM007741.1E-40118180IPR003657WRKY domain
PfamPF031065.9E-27119178IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MQNDGTGSEL RSTLMAELAR ALQLVSQLQS HLDHPSAAEL CKSLATEILS SIGKSILMAK  60
SGDPDGDLQA GNSPRSENSS PAFRDPGRRD FMKKKKTMHK LTNQVRLIPG VGGVEGPVDD  120
GYSWRKYGQK DILGAKHPRA YYRCTHRSSQ GCQATKQVQR SGEDPLVFDV TYLGTHTCLQ  180
RPQRAPTSAC LGHQSSYTLE MEGVHCEEEA WGLTSLSYGS MAVMGDTAAD LFSSLSSPPA  240
FSSPYQISSF DGGMKLQTSD SDIAEMISRG DSASNSSLKC MSLQRIISCD NNIIH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-22118178868OsWRKY45
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388283.10.0PREDICTED: probable WRKY transcription factor 53
TrEMBLM0UC400.0M0UC40_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP24820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.13e-33WRKY family protein