PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP22640_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Trihelix | ||||||||
Protein Properties | Length: 180aa MW: 21341.5 Da PI: 9.5448 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 67.4 | 2.9e-21 | 2 | 97 | 1 | 79 |
trihelix 1 rWtkqevlaLiearr.................emeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt++ v++Li ++ +r +++ +kk++W+ vsk m e+g+ +sp+qC++k+++lnkryk+++ GSMUA_AchrUn_randomP22640_001 2 KWTDEVVRLLISVVAfvgdhddgsleilngsaAARRRHGASLQKKGKWKTVSKLMLEKGCYVSPQQCEDKFNDLNKRYKRLN 83 699999999999999888888888877766444444445566**************************************** PP trihelix 66 egekkrtsessstc 79 e+ +++ts +++++ GSMUA_AchrUn_randomP22640_001 84 EILGRGTSCQVRQW 97 ******88777777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.9E-18 | 2 | 94 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MKWTDEVVRL LISVVAFVGD HDDGSLEILN GSAAARRRHG ASLQKKGKWK TVSKLMLEKG 60 CYVSPQQCED KFNDLNKRYK RLNEILGRGT SCQVRQWFKG RALQLEEERV EIEAEALELE 120 KRHFKWQRFR GKKDRELERL MLENERLKLE NERMALQVRQ KELELDILRS MDREQDIQGN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387998.1 | 7e-61 | PREDICTED: uncharacterized protein LOC103974835 | ||||
Refseq | XP_018677481.1 | 7e-61 | PREDICTED: uncharacterized protein LOC103974835 | ||||
Refseq | XP_018677482.1 | 7e-61 | PREDICTED: uncharacterized protein LOC103974835 | ||||
TrEMBL | M0UBH2 | 1e-126 | M0UBH2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP22640_001 | 1e-127 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76870.1 | 2e-30 |