PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP22350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 310aa    MW: 35148.5 Da    PI: 6.4151
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP22350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.61.2e-0738642248
                                   T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                                   g+W+++++  g+ R++k+c++rw +yl
  GSMUA_AchrUn_randomP22350_001 38 GCWSSVPKLAGLQRCGKSCRLRWINYL 64
                                   57***********************97 PP
2Myb_DNA-binding43.76.2e-1470114147
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    rg+++++E++ +v ++  lG++ W++Ia+ ++ gRt++++k++w++ 
  GSMUA_AchrUn_randomP22350_001  70 RGSFSQQEEDVIVGLHGILGNR-WSKIASQLP-GRTDNEIKNFWNSC 114
                                    899*******************.*********.***********975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717142066IPR001005SANT/Myb domain
CDDcd001670.006512964No hitNo description
PfamPF002498.0E-63464IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-133571IPR009057Homeodomain-like
PROSITE profilePS500905.8894064IPR017877Myb-like domain
SuperFamilySSF466892.9E-2050124IPR009057Homeodomain-like
PROSITE profilePS5129423.90765119IPR017930Myb domain
SMARTSM007173.1E-1269117IPR001005SANT/Myb domain
PfamPF002494.4E-1270114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2472119IPR009057Homeodomain-like
CDDcd001676.95E-872112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MSLRDCSLLL SSTICVLRTE FSACTAKNRC VVRVKDVGCW SSVPKLAGLQ RCGKSCRLRW  60
INYLRPDLKR GSFSQQEEDV IVGLHGILGN RWSKIASQLP GRTDNEIKNF WNSCLKKKLR  120
LRGIDPTTHR PLNEVKTQEE AIRMYYSNSG ANFEQLPENP FPLIEIQTCL DSIESNANFH  180
YQFHQPFEPL SQNERLVKPE FCDYGGVMNV PENFGYGESS SNSGDWNCNV APEIKHVFGS  240
EALNWVSVSK AETLVEPHEH KHSSWRESQH VTSSEDFSTE PVGSLPRDLS DICFNVPREA  300
SAGEFNVEFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A8e-212911917108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387971.20.0PREDICTED: myb-related protein Hv33-like
SwissprotP200271e-59MYB3_HORVU; Myb-related protein Hv33
TrEMBLM0UBE30.0M0UBE3_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP22350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23273391
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-58myb domain protein 55