PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP22350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 310aa MW: 35148.5 Da PI: 6.4151 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.6 | 1.2e-07 | 38 | 64 | 22 | 48 |
T-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48 g+W+++++ g+ R++k+c++rw +yl GSMUA_AchrUn_randomP22350_001 38 GCWSSVPKLAGLQRCGKSCRLRWINYL 64 57***********************97 PP | |||||||
2 | Myb_DNA-binding | 43.7 | 6.2e-14 | 70 | 114 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++++E++ +v ++ lG++ W++Ia+ ++ gRt++++k++w++ GSMUA_AchrUn_randomP22350_001 70 RGSFSQQEEDVIVGLHGILGNR-WSKIASQLP-GRTDNEIKNFWNSC 114 899*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 14 | 20 | 66 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 0.00651 | 29 | 64 | No hit | No description |
Pfam | PF00249 | 8.0E-6 | 34 | 64 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-13 | 35 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 5.889 | 40 | 64 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 2.9E-20 | 50 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.907 | 65 | 119 | IPR017930 | Myb domain |
SMART | SM00717 | 3.1E-12 | 69 | 117 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-12 | 70 | 114 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-24 | 72 | 119 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.95E-8 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 310 aa Download sequence Send to blast |
MSLRDCSLLL SSTICVLRTE FSACTAKNRC VVRVKDVGCW SSVPKLAGLQ RCGKSCRLRW 60 INYLRPDLKR GSFSQQEEDV IVGLHGILGN RWSKIASQLP GRTDNEIKNF WNSCLKKKLR 120 LRGIDPTTHR PLNEVKTQEE AIRMYYSNSG ANFEQLPENP FPLIEIQTCL DSIESNANFH 180 YQFHQPFEPL SQNERLVKPE FCDYGGVMNV PENFGYGESS SNSGDWNCNV APEIKHVFGS 240 EALNWVSVSK AETLVEPHEH KHSSWRESQH VTSSEDFSTE PVGSLPRDLS DICFNVPREA 300 SAGEFNVEFI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-21 | 29 | 119 | 17 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possible transcription activator in response to an external signal. May be involved in the regulation of flavonoid biosynthesis. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387971.2 | 0.0 | PREDICTED: myb-related protein Hv33-like | ||||
Swissprot | P20027 | 1e-59 | MYB3_HORVU; Myb-related protein Hv33 | ||||
TrEMBL | M0UBE3 | 0.0 | M0UBE3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP22350_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2327 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 2e-58 | myb domain protein 55 |