PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP21980_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 255aa MW: 29324 Da PI: 9.6558 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 167.7 | 3.8e-52 | 11 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra 77 +ppGfrFhPt+eel+++yL+kkv ++k++l +vi++vd++k+ePwd+++k++ +++wyfFs++dkky+tg+r+nra GSMUA_AchrUn_randomP21980_001 11 VPPGFRFHPTEEELLNYYLRKKVMSEKIDL-DVIRDVDLNKLEPWDIQEKCRIgstPQNDWYFFSHKDKKYPTGTRTNRA 89 69****************************.9***************964443122456********************* PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t++g+Wkatg+dk ++s + + +g++ktLvfy+grap+g+k+dW+mheyrl GSMUA_AchrUn_randomP21980_001 90 TAAGFWKATGRDKVIYS-SVTRIGMRKTLVFYRGRAPHGQKSDWIMHEYRL 139 *****************.8889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.44E-58 | 8 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.992 | 11 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 12 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MSISVNAESC VPPGFRFHPT EEELLNYYLR KKVMSEKIDL DVIRDVDLNK LEPWDIQEKC 60 RIGSTPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKVIYSSVTR IGMRKTLVFY 120 RGRAPHGQKS DWIMHEYRLD DHSDLISHSN VQGTNQEDAW VVCRVFKKKN HHRAIDRPNN 180 SASVTSDAKT QLLHHPGSGD DALDQILQYM GRSCKGESQW TTNSTSNNIE SHQPCVSVKG 240 SRQHMRTVMS LPTRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-51 | 11 | 170 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 11 | 170 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 11 | 170 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 11 | 170 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 11 | 170 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 11 | 170 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 11 | 170 | 17 | 167 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387910.2 | 1e-172 | PREDICTED: NAC domain-containing protein 43-like | ||||
Swissprot | Q84WP6 | 1e-110 | NAC43_ARATH; NAC domain-containing protein 43 | ||||
TrEMBL | M0UBA6 | 0.0 | M0UBA6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP21980_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1597 | 38 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46770.1 | 1e-101 | NAC family protein |