PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP21150_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MYB | ||||||||
Protein Properties | Length: 223aa MW: 24442.3 Da PI: 6.8769 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.4 | 2.9e-07 | 17 | 38 | 1 | 22 |
TSSS-HHHHHHHHHHHHHTTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg 22 +g+W++eEde l ++v+++G++ GSMUA_AchrUn_randomP21150_001 17 KGSWSPEEDEALTRLVERHGPR 38 799*****************98 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 47 | 88 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T Ed +++a++++G++ W+tIar ++ gRt++ +k++w++ GSMUA_AchrUn_randomP21150_001 47 PFTSAEDAAILEAHARFGNK-WATIARLLP-GRTDNAIKNHWNS 88 89******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 12 | 38 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.35E-17 | 15 | 86 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.8E-14 | 16 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.44E-12 | 19 | 87 | No hit | No description |
PROSITE profile | PS51294 | 22.525 | 40 | 94 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.6E-20 | 41 | 93 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.6E-13 | 47 | 88 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MMMMMAEESY RREQRVKGSW SPEEDEALTR LVERHGPRNC PAVHHRPFTS AEDAAILEAH 60 ARFGNKWATI ARLLPGRTDN AIKNHWNSAL RRRATFAAPD PILPSSSSPT ANHEPDDSYS 120 GSARKRRRSS DNANEGGCRS AAAELGTSLS LSLPGEGGGV MAAVSGEERT WEAPPGDVCL 180 VTIMRQMIAE EVRSYIDRTR SQGGVEMTVP AVVKPETAFD CHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-22 | 16 | 94 | 3 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 8e-22 | 16 | 94 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 8e-22 | 16 | 94 | 57 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 2e-22 | 16 | 94 | 3 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 2e-22 | 16 | 94 | 3 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 123 | 127 | RKRRR |
2 | 123 | 128 | RKRRRS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK355241 | 7e-31 | AK355241.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1018A13. | |||
GenBank | KF059418 | 7e-31 | KF059418.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) mRNA, complete cds. | |||
GenBank | KF059528 | 7e-31 | KF059528.1 Salvia miltiorrhiza MYB-related transcription factor (MYB64) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387830.1 | 1e-153 | PREDICTED: transcription factor MYB44-like | ||||
TrEMBL | M0UB23 | 1e-163 | M0UB23_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP21150_001 | 1e-164 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-33 | myb domain protein 73 |