PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP21080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB
Protein Properties Length: 283aa    MW: 31251 Da    PI: 6.2525
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP21080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.71.8e-152269148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEde+l ++  + G g+W+ +ar  g+ R++k+c++rw +yl
  GSMUA_AchrUn_randomP21080_001 22 KGLWSPEEDEKLMNYMLRNGQGCWSDVARNAGLQRCGKSCRLRWINYL 69
                                   678*******************************************97 PP
2Myb_DNA-binding51.52.3e-1675118146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+++++E+el+++++  lG++ W+ Ia++++ gRt++++k++w++
  GSMUA_AchrUn_randomP21080_001  75 RGAFSPQEEELIAHLHSILGNR-WSQIASRLP-GRTDNEIKNFWNS 118
                                    89********************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8681769IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-231772IPR009057Homeodomain-like
SuperFamilySSF466892.97E-2820116IPR009057Homeodomain-like
SMARTSM007171.5E-102171IPR001005SANT/Myb domain
PfamPF002495.7E-142269IPR001005SANT/Myb domain
CDDcd001674.25E-92569No hitNo description
PROSITE profilePS5129424.17970124IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-2573125IPR009057Homeodomain-like
SMARTSM007172.0E-1574122IPR001005SANT/Myb domain
PfamPF002495.2E-1575118IPR001005SANT/Myb domain
CDDcd001679.00E-1177117No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MMRKNELTGD STNVDGNSKL RKGLWSPEED EKLMNYMLRN GQGCWSDVAR NAGLQRCGKS  60
CRLRWINYLR PDLKRGAFSP QEEELIAHLH SILGNRWSQI ASRLPGRTDN EIKNFWNSTI  120
KKRLKNSTNT GDPNPKAAIG SFAGAKEHQR QSVYTHSSPP SSSSSSSVHG FSVGNQYDLL  180
PLPGAAGCGV TRVEDSYFHE PQDLAQVGME MAMVKGGLMG AGCELFVPPL ESSQEENAMN  240
DTSGVDVSDG GGVFWEGENM RVAQWELGDL MKDASFPFPW FLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281712422128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387819.10.0PREDICTED: transcription factor MYB46-like
TrEMBLM0UB160.0M0UB16_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP21080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-69myb domain protein 46