PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP20290_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family M-type_MADS
Protein Properties Length: 99aa    MW: 11585.5 Da    PI: 11.7301
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP20290_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.41.4e-261261251
                                   ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                         SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                                   rie+ + rqv fskRr g++KKA+EL vLCdaeva+++fs+ gklye+ss
  GSMUA_AchrUn_randomP20290_001 12 RIEDRTSRQVRFSKRRSGLFKKAFELAVLCDAEVALLVFSPGGKLYEFSS 61
                                   8***********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.6E-34362IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.212363IPR002100Transcription factor, MADS-box
CDDcd002658.63E-34469No hitNo description
PRINTSPR004047.9E-28525IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.1E-28580IPR002100Transcription factor, MADS-box
PfamPF003194.4E-261259IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-282540IPR002100Transcription factor, MADS-box
PRINTSPR004047.9E-284061IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 99 aa     Download sequence    Send to blast
MAPRRGRVEM RRIEDRTSRQ VRFSKRRSGL FKKAFELAVL CDAEVALLVF SPGGKLYEFS  60
SVSRTRNVIL SLFNLQKMQK EMLVSYNQTK SSWTLSRKH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A3e-16563260Myocyte-specific enhancer factor 2A
3kov_B3e-16563260Myocyte-specific enhancer factor 2A
3kov_I3e-16563260Myocyte-specific enhancer factor 2A
3kov_J3e-16563260Myocyte-specific enhancer factor 2A
3mu6_A3e-16563260Myocyte-specific enhancer factor 2A
3mu6_B3e-16563260Myocyte-specific enhancer factor 2A
3mu6_C3e-16563260Myocyte-specific enhancer factor 2A
3mu6_D3e-16563260Myocyte-specific enhancer factor 2A
3p57_A3e-16563260Myocyte-specific enhancer factor 2A
3p57_B3e-16563260Myocyte-specific enhancer factor 2A
3p57_C3e-16563260Myocyte-specific enhancer factor 2A
3p57_D3e-16563260Myocyte-specific enhancer factor 2A
3p57_I3e-16563260Myocyte-specific enhancer factor 2A
3p57_J3e-16563260Myocyte-specific enhancer factor 2A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under short day (SD) conditions. Functions as promoter of flowering under SD conditions, upstream of EHD1, HD3A and MADS14, but downstream of GIGANTEA (GI). May transmit a SD promotion signal from GI to EHD1. Functions independently of MADS50 to control flowering time. {ECO:0000269|PubMed:17951465}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4693342e-50KF469334.1 Brachypodium distachyon MADS-box transcription factor 40 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387713.17e-38PREDICTED: MADS-box transcription factor 51 isoform X1
SwissprotQ9XJ611e-29MAD51_ORYSJ; MADS-box transcription factor 51
TrEMBLM0UAT89e-66M0UAT8_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP20290_0011e-66(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12938398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11880.11e-28AGAMOUS-like 14
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SL,Lee S,Kim HJ,Nam HG,An G
    OsMADS51 is a short-day flowering promoter that functions upstream of Ehd1, OsMADS14, and Hd3a.
    Plant Physiol., 2007. 145(4): p. 1484-94
    [PMID:17951465]