PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP19380_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 374aa    MW: 41552.6 Da    PI: 4.5689
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP19380_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.49.6e-20108159156
                            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                                    s+++G+r+++ +grW+AeIrdp++     r++lg+f++ae+Aa+a++a +++++g+
  GSMUA_AchrUn_randomP19380_001 108 SQFRGIRQRP-WGRWAAEIRDPCK---GVRVWLGTFDSAEQAARAYDAEARRIRGH 159
                                    789*******.**********854...3**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.51E-21108167IPR016177DNA-binding domain
CDDcd000181.58E-30108167No hitNo description
PROSITE profilePS5103223.169109166IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-30109166IPR001471AP2/ERF domain
SMARTSM003807.6E-36109172IPR001471AP2/ERF domain
PfamPF008475.4E-12109159IPR001471AP2/ERF domain
PRINTSPR003672.3E-10110121IPR001471AP2/ERF domain
PRINTSPR003672.3E-10132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MCGGAIISDL IPATVARRVT AEHLWPGGRR RRGKQQRREV EEDFEADFLE FDDESGEDEF  60
EDEFDDEVDA NSSGFGSNTS FSREISVTLR SRGFGGPACK SGKRKRKSQF RGIRQRPWGR  120
WAAEIRDPCK GVRVWLGTFD SAEQAARAYD AEARRIRGHK AKVNFPAGSK SGAKKSILKP  180
TAPRTHTSNM SEKLECKHSD HPNDQDCVFY SAMGLLEEEL TKPDYFYPFA SEGPSAPCEG  240
LDFHSAEEGA EESDSFGHPE FIWEHEDKTP EIKLVDVPTA IEGNGTGLLG DDGHQENLKN  300
GCGAESSAEE TTAIKLSKNL YAFDSYMNFL QFPYTEGSSN VSLDCLFGGE LAQDDFSTVN  360
LWSFDDLPME GSVY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-19109172569ATERF1
3gcc_A2e-19109172569ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12734GRRRRGKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387627.10.0PREDICTED: ethylene-responsive transcription factor 1-like
TrEMBLM0UAJ70.0M0UAJ7_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP19380_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.33e-27related to AP2 2