PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_AchrUn_randomP19380_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 374aa MW: 41552.6 Da PI: 4.5689 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.4 | 9.6e-20 | 108 | 159 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 s+++G+r+++ +grW+AeIrdp++ r++lg+f++ae+Aa+a++a +++++g+ GSMUA_AchrUn_randomP19380_001 108 SQFRGIRQRP-WGRWAAEIRDPCK---GVRVWLGTFDSAEQAARAYDAEARRIRGH 159 789*******.**********854...3**************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 4.51E-21 | 108 | 167 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.58E-30 | 108 | 167 | No hit | No description |
PROSITE profile | PS51032 | 23.169 | 109 | 166 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-30 | 109 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-36 | 109 | 172 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.4E-12 | 109 | 159 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-10 | 132 | 148 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 374 aa Download sequence Send to blast |
MCGGAIISDL IPATVARRVT AEHLWPGGRR RRGKQQRREV EEDFEADFLE FDDESGEDEF 60 EDEFDDEVDA NSSGFGSNTS FSREISVTLR SRGFGGPACK SGKRKRKSQF RGIRQRPWGR 120 WAAEIRDPCK GVRVWLGTFD SAEQAARAYD AEARRIRGHK AKVNFPAGSK SGAKKSILKP 180 TAPRTHTSNM SEKLECKHSD HPNDQDCVFY SAMGLLEEEL TKPDYFYPFA SEGPSAPCEG 240 LDFHSAEEGA EESDSFGHPE FIWEHEDKTP EIKLVDVPTA IEGNGTGLLG DDGHQENLKN 300 GCGAESSAEE TTAIKLSKNL YAFDSYMNFL QFPYTEGSSN VSLDCLFGGE LAQDDFSTVN 360 LWSFDDLPME GSVY |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 109 | 172 | 5 | 69 | ATERF1 |
3gcc_A | 2e-19 | 109 | 172 | 5 | 69 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 27 | 34 | GRRRRGKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387627.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 1-like | ||||
TrEMBL | M0UAJ7 | 0.0 | M0UAJ7_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP19380_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G14230.3 | 3e-27 | related to AP2 2 |