PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP18820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARR-B
Protein Properties Length: 266aa    MW: 30489.7 Da    PI: 6.1899
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP18820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.86.6e-25216265151
                        G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 
                                    kpr++W+ +LH++Fv av+qL G++kA+Pk+ilelm+v+ Lt+e+v+SHLQ
  GSMUA_AchrUn_randomP18820_001 216 KPRVVWSIDLHRKFVAAVNQL-GIDKAVPKRILELMNVERLTRENVASHLQ 265
                                    79*******************.***************************** PP
2Response_reg76.97.1e-26271351109
                                    EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEE CS
                   Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvt 78 
                                    vl vdD+p+ +++l+ +l + +y +v+++ +++ al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++
  GSMUA_AchrUn_randomP18820_001  27 VLAVDDDPTCLRVLEALLLRCRY-HVTTTNQATVALKLLRENRdkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLS 104
                                    799********************.***************999889*******************87754.558******* PP

                                    STTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                   Response_reg  79 ahgeeedalealkaGakdflsKpfdpeelvk 109
                                     +ge +++ + +  Ga d+l Kp+ +eel +
  GSMUA_AchrUn_randomP18820_001 105 VNGETKTVMKGIAHGACDYLLKPVRIEELKN 135
                                    ****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.2E-1451266IPR017053Response regulator B-type, plant
SuperFamilySSF521723.7E-3524151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23009.3E-4224148No hitNo description
SMARTSM004486.1E-3025137IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.53926141IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.1E-2327135IPR001789Signal transduction response regulator, receiver domain
CDDcd001563.12E-2528140No hitNo description
Gene3DG3DSA:1.10.10.607.1E-25213265IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15213265IPR009057Homeodomain-like
PROSITE profilePS5129411.413213266IPR017930Myb domain
TIGRFAMsTIGR015571.8E-22216265IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTVEERKGHL MREEGGQNDR FPVGMRVLAV DDDPTCLRVL EALLLRCRYH VTTTNQATVA  60
LKLLRENRDK FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSVNGETK TVMKGIAHGA  120
CDYLLKPVRI EELKNIWQHV VRRRKFSHKD YSNFDNGEES ERHQIVSSEG GQDLNVSGSA  180
NQNGKLSRKR KDQNEEDEDD CEENVHENED LTTQKKPRVV WSIDLHRKFV AAVNQLGIDK  240
AVPKRILELM NVERLTRENV ASHLQA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-21212265154ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677376.10.0PREDICTED: two-component response regulator ORR22 isoform X2
SwissprotB8AEH11e-127ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-127ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLM0UAE10.0M0UAE1_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP18820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-102response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]