PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP18710_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

WRKY

Protein Properties

Length: 310aa MW: 34238.2 Da PI: 5.3717

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP18710_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	102.6	2.2e-32	113	169	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers edp+++++tYeg H h GSMUA_AchrUn_randomP18710_001 113 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCNAKKQVERSMEDPETLIVTYEGLHLH 169 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.7E-30	105	170	IPR003657	WRKY domain
PROSITE profile	PS50811	28.105	107	172	IPR003657	WRKY domain
SuperFamily	SSF118290	4.18E-27	107	170	IPR003657	WRKY domain
SMART	SM00774	3.4E-37	112	171	IPR003657	WRKY domain
Pfam	PF03106	7.0E-26	113	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEEVEGTEVN WFDDFDCSQL ELLRELQAQE SPRFMESQPD APHESVIDKL ISALYSNPAI 60 GDVESALSVT FQNGDSHGRC NSQPIICSPD KGLGRMDHKF TIRIKTCENG LADDGYKWRK 120 YGQKSIKNSP NPRSYYRCTN PRCNAKKQVE RSMEDPETLI VTYEGLHLHY TYSHLLLSGS 180 SQYYYSDTDL HVAKKLKCHS MAEVADAPAQ PPTRSTSTIE PRRLQPAADG AVLLGSADAS 240 LRHGLLDDVS RSSEGLLEDV VPLVVRKPCN STTSSFDAFP SSPASSPSYS SLPLTTNSSH 300 LDLGTLSTIM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	9e-22	106	169	11	74	Probable WRKY transcription factor 4
2lex_A	9e-22	106	169	11	74	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018677368.1	1e-157	PREDICTED: probable WRKY transcription factor 49
TrEMBL	M0UAD0	0.0	M0UAD0_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP18710_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7525	35	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	1e-33	WRKY DNA-binding protein 49