PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP18320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 344aa    MW: 38660.7 Da    PI: 7.9872
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP18320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011144162119
                                    EEETTTTEEESSHHHHHHH CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                                    ++Cp C k+F+r  n++ H
  GSMUA_AchrUn_randomP18320_001 144 FSCPVCYKTFNRYNNMQMH 162
                                    89****************9 PP
2zf-C2H215.16.9e-05228250123
                                    EEETTTTEEESSHHHHHHHHHHT CS
                        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                                    + C +Cgk F  k + ++H +++
  GSMUA_AchrUn_randomP18320_001 228 FMCRKCGKAFAVKGDWRTHEKNC 250
                                    89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.64144171IPR007087Zinc finger, C2H2
SMARTSM003554144166IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.3E-6144163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SuperFamilySSF576671.05E-6209248No hitNo description
Gene3DG3DSA:3.30.160.605.6E-6224248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.787228248IPR007087Zinc finger, C2H2
SMARTSM0035550228248IPR015880Zinc finger, C2H2-like
SMARTSM00355140254277IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MADPYSNFYK LYSHYPLISD PSFPPAAFQS YSFSTHSSLP PHPPSPPLRE ALPLLSLRPT  60
RHQEEEEDTS CSASAGGSRN KAARDDDEAD DEVGGVTVAL HIGLPSPGDD VVTSGYPSNS  120
LGRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHKWGHGSQY RKGPESLRGI  180
QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVK  240
GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKSFGHGHA AYGINCFEEE DDPSSEIEQD  300
CHQLNECHRG PSPVATFRAH MNCLISFPCS DELVCPSAVL YFLF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260391e-138AC226039.1 Musa acuminata clone BAC MA4-3G18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387483.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-126ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLM0UA910.0M0UA91_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP18320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-126C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]