PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP18110_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

CO-like

Protein Properties

Length: 319aa MW: 34334 Da PI: 8.0548

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP18110_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	27.5	6.6e-09	14	51	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 +r+C+ +++ ++ lfC+ + +lC +C H g H GSMUA_AchrUn_randomP18110_001 14 ARRCDSCKSAPALLFCRADADYLCGECDARLH-GarprH 51 589*************************9999.446666 PP
2	zf-B_box	25.8	2.3e-08	54	98	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+ +e+ +++ C+ + +C+ C +H+ H++ p GSMUA_AchrUn_randomP18110_001 54 VWVCEVCEQAPASVTCKADAAAICAACDADIHSAnplalrHERAP 98 689*****************************6688888888766 PP
3	CCT	68.3	2.1e-23	245	289	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+a+++RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrFvk++e GSMUA_AchrUn_randomP18110_001 245 RKARVMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFVKRSE 289 9*****************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00336	0.069	12	50	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	9.926	12	56	IPR000315	B-box-type zinc finger
CDD	cd00021	1.02E-7	15	56	No hit	No description
Pfam	PF00643	1.9E-6	15	52	IPR000315	B-box-type zinc finger
SMART	SM00336	7.7E-14	52	99	IPR000315	B-box-type zinc finger
PROSITE profile	PS50119	10.168	52	99	IPR000315	B-box-type zinc finger
Pfam	PF00643	1.1E-6	54	98	IPR000315	B-box-type zinc finger
PROSITE profile	PS51017	16.817	245	287	IPR010402	CCT domain
Pfam	PF06203	1.6E-17	245	287	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MASEKDGYWI AVGARRCDSC KSAPALLFCR ADADYLCGEC DARLHGARPR HGRVWVCEVC 60 EQAPASVTCK ADAAAICAAC DADIHSANPL ALRHERAPVV PFLEPLASAA ASWLLPNLCA 120 NGLMKKPDGK QVDHFFSDVE TYLDLEHATS MDERYQQGDG VVPVHAKATV GDGGAPPLGP 180 FLPPDGVFEL DLVGSKPSYS PYTADSLSHT VSFSEFGVVP DGNGGGAKWA TVDVAGGGGG 240 RAADRKARVM RYREKRKSRR FEKTIRYASR KAYAETRPRI KGRFVKRSEI EAVEVGRKHS 300 SAMGVAFMVD PGYGVVPSF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM666331	3e-49	KM666331.1 Ananas bracteatus clone 51620b microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387459.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 3-like
Swissprot	Q9FHH8	2e-80	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	M0UA70	0.0	M0UA70_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP18110_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2191	32	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24790.1	1e-59	CONSTANS-like 3

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]