PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP17930_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 288aa    MW: 31812 Da    PI: 7.4737
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP17930_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.52.5e-32180237259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                    +Dgy+WrKYGqK vk+s++prsYYrCt ++C+vkk+vers +d +vv++tYeg+H+h+
  GSMUA_AchrUn_randomP17930_001 180 EDGYRWRKYGQKAVKNSPYPRSYYRCTAPKCNVKKRVERSYQDSSVVVTTYEGQHTHH 237
                                    8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.2E-34164239IPR003657WRKY domain
SuperFamilySSF1182901.7E-28171239IPR003657WRKY domain
PROSITE profilePS5081130.745174239IPR003657WRKY domain
SMARTSM007742.3E-37179238IPR003657WRKY domain
PfamPF031066.1E-25180237IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSGDEADHYG RRHDHFPFHG EPSSVSPQKP GSSSSGAANS LQVSDLKTLS PFLSFTDYLH  60
DSPVDFHNLV PAFDDPSPRS HLLGGAHEPC ELLAGGDGTA PVTPNSSMTS SSTEAAGEED  120
LGARKTDRPK QEEGEEKQAA GGEEGRDKFK KVNKPRKKGE RRQREPRIAF MTKSEVDHLE  180
DGYRWRKYGQ KAVKNSPYPR SYYRCTAPKC NVKKRVERSY QDSSVVVTTY EGQHTHHSPV  240
NLRLAPSPPT TSFRGDLLSH QPSPVNSNIN QQAEGHGLLQ DIVPTLEK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-27169239777Probable WRKY transcription factor 4
2lex_A8e-27169239777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145157RDKFKKVNKPRKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009387434.10.0PREDICTED: probable WRKY transcription factor 28
SwissprotQ8VWJ24e-50WRK28_ARATH; WRKY transcription factor 28
TrEMBLM0UA520.0M0UA52_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP17930_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.19e-50WRKY DNA-binding protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kim SH, et al.
    Characterization of a Novel DWD protein that participates in heat stress response in Arabidopsis.
    Mol. Cells, 2014. 37(11): p. 833-40
    [PMID:25358503]
  4. Zhao L, et al.
    KLU suppresses megasporocyte cell fate through SWR1-mediated activation of WRKY28 expression in Arabidopsis.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(3): p. E526-E535
    [PMID:29288215]