PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_AchrUn_randomP17570_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family WRKY
Protein Properties Length: 301aa    MW: 32569.5 Da    PI: 7.5975
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_AchrUn_randomP17570_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.81.1e-33160217259
                                    --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                           WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                    +Dgy+WrKYGqK vk+s++prsYYrCtsa C vkk+vers+edp vv++tYeg+H+h+
  GSMUA_AchrUn_randomP17570_001 160 EDGYRWRKYGQKAVKNSPYPRSYYRCTSAACGVKKRVERSSEDPAVVVTTYEGQHTHP 217
                                    8********************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.8E-35144219IPR003657WRKY domain
SuperFamilySSF1182903.92E-29152219IPR003657WRKY domain
PROSITE profilePS5081132.397154219IPR003657WRKY domain
SMARTSM007746.6E-40159218IPR003657WRKY domain
PfamPF031066.0E-27160217IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MEASADAIPP PFSSQIPSTF PLPGGFFDAD GGDKGSVGFL ELLGLRDLNQ SPFLFELPRP  60
TSAVEPPPAT SDPPPRLPPP AESSDTANFP ATPSSISSSS TEAAVNAIKP AASSITNGDE  120
GEQAKTNRTT KEEEKKKKGQ KRQREPRFAF KTRSEVDHLE DGYRWRKYGQ KAVKNSPYPR  180
SYYRCTSAAC GVKKRVERSS EDPAVVVTTY EGQHTHPSPI RARGAHQPLP PPSLVLLEPP  240
PPPLGFGFPS SPLMLTSDPT TAVAISGDPR HGCNRTAEVS IRDHGLLQDL IPSKIRKEEE  300
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-29149219777Probable WRKY transcription factor 4
2lex_A5e-29149219777Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018677345.11e-172PREDICTED: probable WRKY transcription factor 23 isoform X2
TrEMBLM0UA160.0M0UA16_MUSAM; Uncharacterized protein
STRINGGSMUA_AchrUn_randomP17570_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21253796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.19e-44WRKY DNA-binding protein 71