PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP17570_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | WRKY | ||||||||
Protein Properties | Length: 301aa MW: 32569.5 Da PI: 7.5975 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 106.8 | 1.1e-33 | 160 | 217 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s++prsYYrCtsa C vkk+vers+edp vv++tYeg+H+h+ GSMUA_AchrUn_randomP17570_001 160 EDGYRWRKYGQKAVKNSPYPRSYYRCTSAACGVKKRVERSSEDPAVVVTTYEGQHTHP 217 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.8E-35 | 144 | 219 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.92E-29 | 152 | 219 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.397 | 154 | 219 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.6E-40 | 159 | 218 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.0E-27 | 160 | 217 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MEASADAIPP PFSSQIPSTF PLPGGFFDAD GGDKGSVGFL ELLGLRDLNQ SPFLFELPRP 60 TSAVEPPPAT SDPPPRLPPP AESSDTANFP ATPSSISSSS TEAAVNAIKP AASSITNGDE 120 GEQAKTNRTT KEEEKKKKGQ KRQREPRFAF KTRSEVDHLE DGYRWRKYGQ KAVKNSPYPR 180 SYYRCTSAAC GVKKRVERSS EDPAVVVTTY EGQHTHPSPI RARGAHQPLP PPSLVLLEPP 240 PPPLGFGFPS SPLMLTSDPT TAVAISGDPR HGCNRTAEVS IRDHGLLQDL IPSKIRKEEE 300 L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-29 | 149 | 219 | 7 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-29 | 149 | 219 | 7 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018677345.1 | 1e-172 | PREDICTED: probable WRKY transcription factor 23 isoform X2 | ||||
TrEMBL | M0UA16 | 0.0 | M0UA16_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP17570_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2125 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 9e-44 | WRKY DNA-binding protein 71 |