PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_AchrUn_randomP17360_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

NAC

Protein Properties

Length: 327aa MW: 36854.8 Da PI: 7.5287

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_AchrUn_randomP17360_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	169.7	9.1e-53	7	135	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrFhPtdeel+ +yL++++++ ++++ ++i+evdiyk++Pw+Lp+k+ +++ewyfFs+rd+ky++g r+nra++s GSMUA_AchrUn_randomP17360_001 7 LPPGFRFHPTDEELILHYLRNRASSMPCPV-SIIAEVDIYKFDPWELPAKALFGDREWYFFSPRDRKYPNGVRPNRAAAS 85 79**************************.89***********888889********************** PP NAM 81 gyWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+dk+++++ + ++g+kk Lvfykg+ pkg+ktdW+mheyrl GSMUA_AchrUn_randomP17360_001 86 GYWKATGTDKPIVASkgMSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 135 *********98555566*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.44E-63	5	167	IPR003441	NAC domain
PROSITE profile	PS51005	61.061	7	167	IPR003441	NAC domain
Pfam	PF02365	4.3E-27	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MSNPTSLPPG FRFHPTDEEL ILHYLRNRAS SMPCPVSIIA EVDIYKFDPW ELPAKALFGD 60 REWYFFSPRD RKYPNGVRPN RAAASGYWKA TGTDKPIVAS KGMSDNIGVK KALVFYKGKP 120 PKGVKTDWIM HEYRLAEALR SNNYQTIKLR GSSMRLDDWV LCRIYKKSNH QLPLDAEQED 180 TGVEAASPHS MQQNGFLKLP KSYSLTELLD AADYSTLARL LENPPDVLGS QNCSINYPDS 240 NPSFVPHCNQ AELPVPIKDN VLKRKQIVNS SCFEEDDEFS FPAKKPTVPR TFDNTAFDSL 300 PYSLLLSSDL GLQLGHSAQQ AKAAYEM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-72	6	170	14	171	Stress-induced transcription factor NAC1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00333	DAP	Transfer from AT3G04070	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009387374.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	K4BNG7	2e-89	NAP2_SOLLC; NAC domain-containing protein 2
Swissprot	Q84TD6	7e-89	NAC47_ARATH; NAC transcription factor 47
TrEMBL	M0U9Z5	0.0	M0U9Z5_MUSAM; Uncharacterized protein
STRING	GSMUA_AchrUn_randomP17360_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3803	37	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	4e-91	NAC domain containing protein 47

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]