PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_AchrUn_randomP17260_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 28784.6 Da PI: 8.7826 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141 | 6.9e-44 | 10 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk............kvkaeekewyfFskrdkk 67 lppGfrF P+deelv++yL kkv ++ ++e + +++ + ++ P + ++k + +ewyfFs rd+k GSMUA_AchrUn_randomP17260_001 10 LPPGFRFYPSDEELVCHYLYKKVLSNGGSAEGTmVEDSRCGDALPVVIVGcrrredvsfpldAAKLSANEWYFFSFRDRK 89 79*********************9999666554366667777777777533556666666665666889*********** PP NAM 68 yatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129 ya+g+r+nratksgyWkatgkd+++++ +++ vg++ktLvfy+grap+g kt Wvmhe+rle GSMUA_AchrUn_randomP17260_001 90 YASGSRANRATKSGYWKATGKDRTIYDPtTHTMVGMRKTLVFYQGRAPNGAKTGWVMHEFRLE 152 ***************************966677***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-51 | 8 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.501 | 10 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.4E-28 | 11 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGLRDIESTL PPGFRFYPSD EELVCHYLYK KVLSNGGSAE GTMVEDSRCG DALPVVIVGC 60 RRREDVSFPL DAAKLSANEW YFFSFRDRKY ASGSRANRAT KSGYWKATGK DRTIYDPTTH 120 TMVGMRKTLV FYQGRAPNGA KTGWVMHEFR LETPHSPPKE DWVLCRVFHK RKGEGEEHEQ 180 LSASSAMPAG VCHGQVGPSF STLPRQEDSS LNPFLNVALL QCNSLGFPQE TGSRFVTGIS 240 PRFSIFFFPK LLNNHGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-39 | 1 | 171 | 7 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009387368.1 | 1e-158 | PREDICTED: NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 3e-52 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | M0U9Y5 | 0.0 | M0U9Y5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_AchrUn_randomP17260_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 6e-71 | NAC domain containing protein 74 |